View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6343_low_15 (Length: 266)

Name: NF6343_low_15
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6343_low_15
NF6343_low_15
[»] chr2 (4 HSPs)
chr2 (20-252)||(43867450-43867682)
chr2 (20-210)||(43863958-43864149)
chr2 (20-245)||(43875129-43875351)
chr2 (100-203)||(38989109-38989212)
[»] chr4 (3 HSPs)
chr4 (89-245)||(52186780-52186936)
chr4 (133-212)||(15527301-15527380)
chr4 (133-173)||(35968336-35968376)
[»] scaffold0438 (1 HSPs)
scaffold0438 (97-203)||(5312-5418)
[»] chr3 (11 HSPs)
chr3 (76-186)||(480963-481073)
chr3 (76-227)||(476010-476161)
chr3 (89-183)||(778176-778270)
chr3 (94-203)||(1304691-1304800)
chr3 (94-186)||(1186243-1186335)
chr3 (94-186)||(1204307-1204399)
chr3 (96-159)||(5361014-5361077)
chr3 (146-224)||(2996512-2996590)
chr3 (118-182)||(4149603-4149667)
chr3 (118-182)||(4165375-4165439)
chr3 (89-161)||(7125963-7126035)
[»] chr5 (3 HSPs)
chr5 (97-182)||(33958061-33958146)
chr5 (119-204)||(19658349-19658434)
chr5 (119-204)||(19675188-19675273)
[»] chr7 (2 HSPs)
chr7 (110-186)||(32413636-32413712)
chr7 (89-162)||(6889182-6889255)
[»] chr6 (5 HSPs)
chr6 (110-183)||(7115536-7115609)
chr6 (110-183)||(7120608-7120681)
chr6 (110-183)||(7124012-7124085)
chr6 (110-162)||(7140726-7140778)
chr6 (110-162)||(8680340-8680392)
[»] scaffold0896 (1 HSPs)
scaffold0896 (110-183)||(2255-2328)
[»] chr1 (1 HSPs)
chr1 (132-164)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 43867450 - 43867682
Alignment:
Q  20 gttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagaccct 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43867450 gttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtcctaaagttcgaagaacttaatgtaatagtaggaagaccct 43867549  T
Q  120 tccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagtt 219  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  43867550 tccagagagtgatccatcttttggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtgaatgagaatacaatcagtcaagtt 43867649  T
Q  220 actgataatgtcttcgttttcgttgtgcctatg 252  Q
    |||||||||||||||||||||||||||| ||||    
T  43867650 actgataatgtcttcgttttcgttgtgcttatg 43867682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 43863958 - 43864149
Alignment:
Q  20 gttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaat-agtaggaagaccc 118  Q
    |||||||||||||||||||||||||| |||||||| ||||||  |||||||| || |||| ||||||| ||||||||||||||||| ||||||||||| |    
T  43863958 gttgagccatcgcgaagagataaaaattgagacagaaattcgcttaaactttccttggtcctaaagtttgaagaacttaatgtaattagtaggaagactc 43864057  T
Q  119 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatc 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||||||||||||||||    
T  43864058 ttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaatgagaatacaatc 43864149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 43875129 - 43875351
Alignment:
Q  20 gttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtcttaaagttcgaagaacttaatgtaatagtaggaagaccct 119  Q
    ||||||||||||| |||||||||||| |||||||||||| |    ||| ||| || |||| ||||||   | |||| |||||||| ||| ||||||| ||    
T  43875129 gttgagccatcgcaaagagataaaaattgagacaggaatacactgaaagtttccttggtcctaaagt---atgaacataatgtaagagtgggaagactct 43875225  T
Q  120 tccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagtt 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| || ||||||||||||||||||  | |||||    
T  43875226 tccaaagattgatccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacactatgtgaatgagaatacaatcgatcaagtt 43875325  T
Q  220 actgataatgtcttcgttttcgttgt 245  Q
    ||||||||||||||| |||| |||||    
T  43875326 actgataatgtcttcatttttgttgt 43875351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 38989212 - 38989109
Alignment:
Q  100 tgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatg 199  Q
    ||||||||| | ||||| |||||||||| ||||||||||||||||||||| ||| |||||||| |||| | ||||||| | |||||||| || ||||| |    
T  38989212 tgtaatagtggaaagactcttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaagg 38989113  T
Q  200 agaa 203  Q
    ||||    
T  38989112 agaa 38989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 245
Target Start/End: Complemental strand, 52186936 - 52186780
Alignment:
Q  89 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggaca 188  Q
    |||||||||| ||||| ||| ||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |    
T  52186936 gaagaacttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggaga 52186837  T
Q  189 atacgtgaatgagaatacaatcagttaagttactgataatgtcttcgttttcgttgt 245  Q
     || ||| | ||||| | ||||||| |||| ||||||||||||||| |||| |||||    
T  52186836 gtaggtggaggagaacagaatcagtcaagtcactgataatgtcttcatttttgttgt 52186780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 15527301 - 15527380
Alignment:
Q  133 ccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcag 212  Q
    |||||||||||||| |||||||||| |||| || ||||| | | ||||||| ||||| | |||||||| ||| |||||||    
T  15527301 ccatcttttggacagaatgcaagttcgaacagcgtctttagtgctcaaaaatgacaaaatgtgaatgataatgcaatcag 15527380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 35968376 - 35968336
Alignment:
Q  133 ccatcttttggacaaaatgcaagtttgaacggcctcttttg 173  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  35968376 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 35968336  T

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Target: scaffold0438 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 5418 - 5312
Alignment:
Q  97 taatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtga 196  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||| || ||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  197 atgagaa 203  Q
    |||||||    
T  5318 atgagaa 5312  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 481073 - 480963
Alignment:
Q  76 ggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 175  Q
    |||| ||||||| ||||||||||| ||||  || ||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  481073 ggtcctaaagtttgaagaacttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcg 480974  T
Q  176 ttcaaaaagga 186  Q
    || ||||||||    
T  480973 tttaaaaagga 480963  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 476161 - 476010
Alignment:
Q  76 ggtcttaaagttcgaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 175  Q
    |||| ||||||| |||||||||| |||||  || ||||||   |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||    
T  476161 ggtcctaaagtttgaagaacttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcg 476062  T
Q  176 ttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactgataa 227  Q
    || |||||||| | |  ||||| |||||||||||| | ||| | ||||||||    
T  476061 tttaaaaaggagagtgtgtgaaggagaatacaatctgataaatcactgataa 476010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 778176 - 778270
Alignment:
Q  89 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 183  Q
    |||||||||||||||| ||| || |||   ||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||    
T  778176 gaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctctttggctttcaaaaa 778270  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 1304691 - 1304800
Alignment:
Q  94 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacg 193  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||||| | || |    
T  1304691 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1304790  T
Q  194 tgaatgagaa 203  Q
    ||| ||||||    
T  1304791 tgattgagaa 1304800  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 1186335 - 1186243
Alignment:
Q  94 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 186  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  1186335 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaagga 1186243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 1204399 - 1204307
Alignment:
Q  94 acttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 186  Q
    ||||||||||| ||| | ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||    
T  1204399 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaagga 1204307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 5361014 - 5361077
Alignment:
Q  96 ttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttg 159  Q
    |||||| || ||| ||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  5361014 ttaatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttg 5361077  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 2996512 - 2996590
Alignment:
Q  146 aaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaatacaatcagttaagttactga 224  Q
    ||||||||||||||||| || ||||||| ||||||||| || | || ||||| || || |||||||||||||| |||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactga 2996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 4149667 - 4149603
Alignment:
Q  118 cttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 182  Q
    ||||||||||||  |||||||  ||||||||| ||| ||||||||||||||||| | ||||||||    
T  4149667 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaa 4149603  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 4165439 - 4165375
Alignment:
Q  118 cttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 182  Q
    ||||||||||||  |||||||  ||||||||| ||| ||||||||||||||||| | ||||||||    
T  4165439 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaa 4165375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 7126035 - 7125963
Alignment:
Q  89 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaa 161  Q
    |||||| |||||||||  || |||||||  |||||||||||  |||||||||||||||| || ||||||||||    
T  7126035 gaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  97 taatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaa 182  Q
    |||||||| |||  |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 19658349 - 19658434
Alignment:
Q  119 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaat 204  Q
    |||||||||||  |||||||  |||||||||  |||||||||||||| | |||||||| |||||| ||||| | ||||| ||||||    
T  19658349 ttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaat 19658434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 19675188 - 19675273
Alignment:
Q  119 ttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaaggacaatacgtgaatgagaat 204  Q
    |||||||||||  |||||||  |||||||||  |||||||||||||| | |||||||| |||||| ||||| | ||||| ||||||    
T  19675188 ttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaat 19675273  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 32413712 - 32413636
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaagga 186  Q
    ||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||| | ||| | ||||||| ||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagagga 32413636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 6889255 - 6889182
Alignment:
Q  89 gaagaacttaatgtaatagtaggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 162  Q
    |||||||||||| |||  |||||||||   |||||||||||| ||||||||||||| | |||||||||||||||    
T  6889255 gaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaac 6889182  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 7115536 - 7115609
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 183  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7115609  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 7120608 - 7120681
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 183  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7120681  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 7124012 - 7124085
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 183  Q
    ||||||| ||||||||||||  ||||||||||||||||||  ||||||||||| || | ||| | |||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaa 7124085  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 7140726 - 7140778
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 162  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  7140726 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 7140778  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 8680340 - 8680392
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaac 162  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  8680340 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 8680392  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 2328 - 2255
Alignment:
Q  110 ggaagacccttccagagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttcaaaaa 183  Q
    ||||||| ||||||||||||  |||||||||||| |||||  ||||||||||| || | ||| | |||||||||    
T  2328 ggaagacacttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaa 2255  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 42602903 - 42602935
Alignment:
Q  132 tccatcttttggacaaaatgcaagtttgaacgg 164  Q
    |||||||||||||||| ||||||||||||||||    
T  42602903 tccatcttttggacaagatgcaagtttgaacgg 42602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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