View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6343_low_16 (Length: 247)

Name: NF6343_low_16
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6343_low_16
NF6343_low_16
[»] chr6 (24 HSPs)
chr6 (20-247)||(25195818-25196045)
chr6 (116-217)||(4910906-4911009)
chr6 (106-217)||(16540105-16540218)
chr6 (62-188)||(31305777-31305905)
chr6 (112-221)||(6654070-6654181)
chr6 (93-218)||(34620883-34621010)
chr6 (93-218)||(34748320-34748447)
chr6 (138-189)||(17225878-17225929)
chr6 (117-188)||(1485131-1485204)
chr6 (112-196)||(25195346-25195432)
chr6 (62-194)||(46218-46354)
chr6 (112-195)||(3482066-3482151)
chr6 (119-188)||(2234542-2234614)
chr6 (146-202)||(7952725-7952781)
chr6 (136-188)||(34027423-34027475)
chr6 (168-219)||(765424-765475)
chr6 (67-162)||(3289798-3289894)
chr6 (135-217)||(5724635-5724717)
chr6 (112-190)||(434217-434297)
chr6 (135-204)||(10874505-10874574)
chr6 (142-199)||(19601457-19601514)
chr6 (112-163)||(2748046-2748098)
chr6 (112-186)||(6653843-6653921)
chr6 (135-219)||(26280601-26280685)
[»] chr8 (17 HSPs)
chr8 (62-215)||(32927892-32928047)
chr8 (62-219)||(26100076-26100235)
chr8 (138-219)||(15677823-15677905)
chr8 (112-202)||(35495003-35495095)
chr8 (135-217)||(13384659-13384741)
chr8 (112-202)||(4662883-4662975)
chr8 (112-220)||(37684400-37684510)
chr8 (118-219)||(18355836-18355937)
chr8 (138-217)||(38868496-38868575)
chr8 (76-202)||(16972008-16972136)
chr8 (146-219)||(32994258-32994331)
chr8 (116-215)||(32767387-32767490)
chr8 (62-160)||(18356020-18356119)
chr8 (112-158)||(32101130-32101178)
chr8 (112-202)||(38335841-38335933)
chr8 (139-217)||(44141059-44141137)
chr8 (140-176)||(33114793-33114829)
[»] chr1 (20 HSPs)
chr1 (63-198)||(7524130-7524267)
chr1 (135-219)||(11049246-11049330)
chr1 (112-202)||(30557517-30557607)
chr1 (112-202)||(1514356-1514448)
chr1 (112-217)||(28083868-28083975)
chr1 (116-194)||(3016183-3016263)
chr1 (112-219)||(6021800-6021905)
chr1 (135-219)||(7790647-7790731)
chr1 (135-219)||(28287341-28287425)
chr1 (135-199)||(30850404-30850468)
chr1 (112-152)||(52059391-52059431)
chr1 (138-205)||(3416090-3416157)
chr1 (114-189)||(10324920-10324997)
chr1 (140-205)||(40662991-40663054)
chr1 (117-187)||(213522-213594)
chr1 (112-220)||(2099667-2099778)
chr1 (116-217)||(48548998-48549099)
chr1 (158-199)||(51500862-51500903)
chr1 (116-189)||(34915092-34915167)
chr1 (135-175)||(38797634-38797674)
[»] chr4 (20 HSPs)
chr4 (114-220)||(32818352-32818460)
chr4 (112-186)||(35065092-35065168)
chr4 (116-217)||(8604606-8604709)
chr4 (112-219)||(21691192-21691301)
chr4 (105-221)||(31012711-31012830)
chr4 (119-202)||(16551970-16552053)
chr4 (76-127)||(20712758-20712809)
chr4 (145-219)||(30357508-30357582)
chr4 (140-194)||(42971912-42971966)
chr4 (105-196)||(45011893-45011986)
chr4 (105-219)||(1616387-1616502)
chr4 (135-188)||(4243414-4243467)
chr4 (112-202)||(53713541-53713633)
chr4 (138-202)||(49138771-49138835)
chr4 (135-194)||(52965859-52965918)
chr4 (135-217)||(39386631-39386713)
chr4 (118-188)||(10185221-10185293)
chr4 (124-217)||(9064229-9064324)
chr4 (138-198)||(27967431-27967491)
chr4 (113-186)||(45694643-45694718)
[»] chr7 (10 HSPs)
chr7 (62-189)||(40491604-40491733)
chr7 (135-221)||(41386820-41386906)
chr7 (76-219)||(45557361-45557506)
chr7 (85-219)||(38123619-38123755)
chr7 (114-195)||(42816450-42816533)
chr7 (139-195)||(45997707-45997764)
chr7 (119-188)||(27571889-27571960)
chr7 (89-217)||(29842087-29842214)
chr7 (141-218)||(31625420-31625495)
chr7 (112-162)||(32295237-32295289)
[»] chr3 (14 HSPs)
chr3 (62-194)||(31708169-31708303)
chr3 (134-198)||(32523344-32523408)
chr3 (116-221)||(40147834-40147941)
chr3 (135-219)||(52364047-52364131)
chr3 (62-194)||(31013039-31013173)
chr3 (121-188)||(46853523-46853592)
chr3 (125-186)||(4526161-4526224)
chr3 (135-195)||(50550594-50550654)
chr3 (105-202)||(52141221-52141320)
chr3 (62-189)||(37334964-37335093)
chr3 (62-188)||(35264341-35264469)
chr3 (137-218)||(44771691-44771772)
chr3 (142-194)||(31492788-31492839)
chr3 (116-189)||(41596133-41596208)
[»] chr2 (15 HSPs)
chr2 (62-184)||(11759789-11759913)
chr2 (86-220)||(16518774-16518909)
chr2 (112-219)||(33019136-33019245)
chr2 (112-217)||(42740975-42741081)
chr2 (112-186)||(33502266-33502339)
chr2 (113-186)||(32596020-32596095)
chr2 (118-215)||(42982544-42982643)
chr2 (112-188)||(22536025-22536103)
chr2 (112-219)||(43501121-43501228)
chr2 (112-198)||(33047562-33047650)
chr2 (116-188)||(44439281-44439355)
chr2 (112-203)||(11504042-11504134)
chr2 (112-194)||(5533011-5533095)
chr2 (112-202)||(13912800-13912892)
chr2 (135-184)||(26032040-26032089)
[»] scaffold0361 (1 HSPs)
scaffold0361 (61-189)||(14043-14173)
[»] chr5 (11 HSPs)
chr5 (113-217)||(6951286-6951392)
chr5 (135-217)||(9818732-9818815)
chr5 (112-217)||(38845441-38845549)
chr5 (111-217)||(18851061-18851169)
chr5 (136-219)||(22572410-22572493)
chr5 (135-219)||(42858104-42858188)
chr5 (76-189)||(18637310-18637424)
chr5 (140-194)||(370743-370797)
chr5 (62-217)||(14299328-14299481)
chr5 (135-196)||(28110443-28110504)
chr5 (135-216)||(22226241-22226322)
[»] scaffold0168 (1 HSPs)
scaffold0168 (106-202)||(31839-31940)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 25196045 - 25195818
Alignment:
Q  20 gctctcaagtagaattgattctagtattgattatttgtatgtttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25196045 gctctcaagtagaattgattctagtattgattatttgtatgtttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtt 25195946  T
Q  120 tggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  25195945 tggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaatcaattct 25195846  T
Q  220 gatttctgaaggcaaaatcaattttact 247  Q
    ||||||||||||||||||||||||||||    
T  25195845 gatttctgaaggcaaaatcaattttact 25195818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 4911009 - 4910906
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 213  Q
    |||||||||||||||||||||  |||||| ||||||||||||||| |||  || |||||||||||||||||||||| ||||| |||||| ||  ||||||    
T  4911009 tgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 4910910  T
Q  214 aatt 217  Q
    ||||    
T  4910909 aatt 4910906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 16540218 - 16540105
Alignment:
Q  106 aagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttt 203  Q
    |||| ||||||||||||||||||| ||||||  ||||||| |||||||||| |||  ||  || ||||||| | |||||||||||| ||||||||||||     
T  16540218 aagtggtttgtgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttc 16540119  T
Q  204 aatcagaatcaatt 217  Q
    ||  ||||||||||    
T  16540118 aagtagaatcaatt 16540105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 31305777 - 31305905
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 159  Q
    |||||| |||||| |||||||| |||||||  | ||||| || ||| |  ||| |||||||||| ||| ||||||  ||||||||| | ||||||||| |    
T  31305777 ttgattttgtaaaattgattccgactaaaagggtgttgaaggtaaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgag 31305876  T
Q  160 tgtacaattcaattctagaatcaaaagct 188  Q
    |||| || |||||||||||||||||||||    
T  31305877 tgtataaatcaattctagaatcaaaagct 31305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 6654070 - 6654181
Alignment:
Q  112 tttgtgtttggatacatttatgta--agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    ||||||||||||| | ||||||||  ||||  ||||||||||||||| |||||  || |||| |||||||| |||||||| |||||||||||| ||  ||    
T  6654070 tttgtgtttggattcgtttatgtagaagtggtttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtag 6654169  T
Q  210 aatcaattctga 221  Q
    ||| ||||||||    
T  6654170 aattaattctga 6654181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 34621010 - 34620883
Alignment:
Q  93 tgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 190  Q
    |||||||| || |||||  ||| |||||||||||||||||||||  ||||||||||  ||||||||  ||||| || ||||||||||||||| |||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34620911  T
Q  191 aaatcctagctttaatcagaatcaattc 218  Q
     | | ||||||| |   |||||||||||    
T  34620910 gatttctagcttcatgtagaatcaattc 34620883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 34748447 - 34748320
Alignment:
Q  93 tgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 190  Q
    |||||||| || |||||  ||| |||||||||||||||||||||  ||||||||||  ||||||||  ||||| || ||||||||||||||| |||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctat 34748348  T
Q  191 aaatcctagctttaatcagaatcaattc 218  Q
     | | ||||||| |   |||||||||||    
T  34748347 gatttctagcttcatgtagaatcaattc 34748320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 17225929 - 17225878
Alignment:
Q  138 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 189  Q
    ||||||||||||||||||||| |||| || ||||||||||||||||||||||    
T  17225929 tgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagcta 17225878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 1485131 - 1485204
Alignment:
Q  117 gtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    ||||||||||| ||||||||  ||||||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  1485131 gtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 1485204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 25195346 - 25195432
Alignment:
Q  112 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 196  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||||| |  || |||||| |||||| |||| ||| ||||||    
T  25195346 tttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc 25195432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 46218 - 46354
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatg--taagtgagttgaactat--aaatttg 157  Q
    ||||||||||||| ||||||| |||||||| |||||||     |||||| ||||||||||||||||||  ||   |||||||||||| |||  |||||||    
T  46218 ttgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagttgaattataaaaatttg 46317  T
Q  158 tgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    | |||   | || ||||||||||||||||||| ||||    
T  46318 tttgttagaatctattctagaatcaaaagctacaaat 46354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 3482151 - 3482066
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 195  Q
    |||||||||| ||||||| ||||||  || |||||||||||||| ||||||||  || ||||||||| ||||||| |||| |||||    
T  3482151 tttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatc 3482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 2234614 - 2234542
Alignment:
Q  119 ttggatacatttatgtaa--gtgagttgaacta-taaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    ||||||||||||||||||  ||||||||||| | |||||||| ||||  || |||||||||||||||||||||    
T  2234614 ttggatacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagct 2234542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 7952725 - 7952781
Alignment:
Q  146 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||||||  ||  ||||||||||||||||||||| ||||||| ||||    
T  7952725 actataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgctt 7952781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 34027423 - 34027475
Alignment:
Q  136 agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    |||||||||||  ||||||||| ||||| || |||||||||||||||||||||    
T  34027423 agtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 765424 - 765475
Alignment:
Q  168 tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||||||||    
T  765424 tcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattct 765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 3289894 - 3289798
Alignment:
Q  67 tctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgt 162  Q
    |||||||| |||||| | ||| ||| |||||||  |  |||||  |||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  3289894 tctgtaaaattgatttcgacttaaagtgagttgcagataaagtgatttgtgtttggatacatt-atgtaaaagtgagttgaattataaatttgtgtgt 3289798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 5724635 - 5724717
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    ||||||||| ||  ||| ||||||||||| || |||||| |||||| ||||| || |||||||||||| ||  ||||||||||    
T  5724635 aagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaatt 5724717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 434217 - 434297
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctat 190  Q
    |||||||||||||| |||  |||||  |||||||||| | ||||||| ||| || || ||||||||| |||||||||||||    
T  434217 tttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaagctat 434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 10874574 - 10874505
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttta 204  Q
    |||||||||||||  ||| ||||  |||| || ||||||||||||||||||||| ||| | |||||||||    
T  10874574 aagtgagttgaacactaagtttgaatgtaaaaatcaattctagaatcaaaagctctaatttctagcttta 10874505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 19601457 - 19601514
Alignment:
Q  142 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 199  Q
    ||||||||||||||| | |||| || ||| || ||||||||||||||| |||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatcctag 19601514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 2748098 - 2748046
Alignment:
Q  112 tttgtgtttggatacatttatgtaa-gtgagttgaactataaatttgtgtgta 163  Q
    |||||||||||||| |||| | ||| |||| ||||||||||||||||||||||    
T  2748098 tttgtgtttggatagatttgtataaagtgaattgaactataaatttgtgtgta 2748046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 6653921 - 6653843
Alignment:
Q  112 tttgtgtttggatacatt--tatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 186  Q
    |||||||||||||||| |  |||||||  ||||||| |||||||||||||  |||  || |||||||||||||||||||    
T  6653921 tttgtgtttggatacaatcatatgtaaaagtgagttaaactataaatttgcatgtgaaactcaattctagaatcaaaag 6653843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 26280685 - 26280601
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    ||||||||| ||||||||||||||  ||| || |||||| | ||||||||| ||| |||| ||||||| ||   |||||||||||    
T  26280685 aagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattct 26280601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 32928047 - 32927892
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 159  Q
    |||||| |||||| |||||||  ||||||| |||||||| ||||||||  |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  32928047 ttgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtg 32927948  T
Q  160 tgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 215  Q
    |||| || | ||||||| |||||||||||| |||||||||||| ||  ||||||||    
T  32927947 tgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaa 32927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 219
Target Start/End: Original strand, 26100076 - 26100235
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 159  Q
    |||||| |||||| |||||||  |||||||| ||||||| || |||| | ||||||||||||| |||||||||||  ||||||||||| |||||||||||    
T  26100076 ttgattatgtaaaattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtg 26100175  T
Q  160 tgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||| || |||||| ||||||||||||||| |||||||||||| ||  |||| |||||||    
T  26100176 tgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattct 26100235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 15677823 - 15677905
Alignment:
Q  138 tgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| ||  ||||||||||||    
T  15677823 tgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattct 15677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 35495095 - 35495003
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||| ||| ||||||  || |||||||||||| ||||||||||| ||  ||||||||||||||||||||| ||||||||||||    
T  35495095 tttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagctt 35495003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 13384659 - 13384741
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||  |||||| ||  ||||||||||    
T  13384659 aagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 4662883 - 4662975
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||||||| | | ||  | ||||||||||||| ||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  4662883 tttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagctt 4662975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 37684510 - 37684400
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||| ||  |  || |||||| ||||||||||||| | |||||||| ||| ||  ||    
T  37684510 tttgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtag 37684411  T
Q  210 aatcaattctg 220  Q
    |||||||||||    
T  37684410 aatcaattctg 37684400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 18355836 - 18355937
Alignment:
Q  118 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 215  Q
    ||||||||||||| |||||  | |||||||||| |||||||||||  | || |||||| ||||||||||||  | |||||||||||| ||||||||||||    
T  18355836 tttggatacatttgtgtaaaagggagttgaactttaaatttgtgt--aaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaa 18355933  T
Q  216 ttct 219  Q
    ||||    
T  18355934 ttct 18355937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 38868575 - 38868496
Alignment:
Q  138 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    |||||||||||||||||||||||||  || |||||| ||||| ||||||||| ||||| |||||| ||  ||||||||||    
T  38868575 tgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 16972008 - 16972136
Alignment:
Q  76 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaatt 173  Q
    |||||||  ||||||| |||||||| || ||| |  |||||||||| ||||||| ||||||  |||| |||||| |||||||||||| || || ||||||    
T  16972008 ttgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaatt 16972107  T
Q  174 ctagaatcaaaagctataaatcctagctt 202  Q
    ||| ||| |||| ||| |||| |||||||    
T  16972108 ctaaaattaaaaactacaaattctagctt 16972136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 32994258 - 32994331
Alignment:
Q  146 actataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    ||||||||||||||| || || ||||||||||| |||||||||| ||||| |||||| ||  ||||||||||||    
T  32994258 actataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattct 32994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 32767490 - 32767387
Alignment:
Q  116 tgtttggatacatttatgt----aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 211  Q
    |||||||||||||| ||||    ||||||||||||| ||||||||  ||||| || ||| |||| |||||||||||||| |||| |||||| || || ||    
T  32767490 tgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaatcaaaagctatgaatcttagcttcaagcataa 32767391  T
Q  212 tcaa 215  Q
    ||||    
T  32767390 tcaa 32767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 18356020 - 18356119
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 159  Q
    |||||| |||||||| ||||| |||||||| |||||||| || || |  |||| |||| |||||||||||| |||  |||||||||| ||||||||||||    
T  18356020 ttgattatgtaaatt-gattctaactaaaagtgagttgaaggtaagggggtttatgttcggatacatttatctaaacgtgagttgaattataaatttgtg 18356118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 32101178 - 32101130
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgt 158  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  32101178 tttgtgtgtggatacatttatgtaaaagtgagttgaactataaatttgt 32101130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 38335841 - 38335933
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||| ||||||||| ||||||  |||||||  | |||||||||||| ||| || ||||||||| |||||||||| | ||||| ||||||    
T  38335841 tttgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaaatcttagctt 38335933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 44141059 - 44141137
Alignment:
Q  139 gagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    ||||||||||||||| || |||||  || |||| ||||||||||||| ||| |||||||| ||| ||  ||||||||||    
T  44141059 gagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaatt 44141137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 33114829 - 33114793
Alignment:
Q  140 agttgaactataaatttgtgtgtacaattcaattcta 176  Q
    ||||||||||||||||||||||||| | |||||||||    
T  33114829 agttgaactataaatttgtgtgtacgaatcaattcta 33114793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 7524267 - 7524130
Alignment:
Q  63 tgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgt 160  Q
    ||||||| |||| ||||||| |||||||| |||| | | || |||||  |||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  7524267 tgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgt 7524168  T
Q  161 gtacaattcaattctagaatcaaaagctataaatccta 198  Q
    ||| || ||||||||| |||||||||||| ||||||||    
T  7524167 gtaaaaatcaattctataatcaaaagctacaaatccta 7524130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 11049330 - 11049246
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||||| |||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||| ||  |||||| |||||    
T  11049330 aagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattct 11049246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 30557607 - 30557517
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||||||| || |||  ||||||||||||||||||||||||| | |  |||||||||||||||||| ||| ||||||||||||    
T  30557607 tttgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtgaaaa--tcaattctagaatcaaaaactacaaatcctagctt 30557517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 1514448 - 1514356
Alignment:
Q  112 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||||||| ||||||   |||||||||| ||||||||||||||| || |||||| || ||| |||||||| ||||||||||||    
T  1514448 tttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagctt 1514356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 28083868 - 28083975
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    |||||||||||||| ||| ||||||  ||||| ||||||  ||||||||||||| || | |||| ||||||||||||||| |||| ||||||| ||  ||    
T  28083868 tttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtag 28083967  T
Q  210 aatcaatt 217  Q
    ||||||||    
T  28083968 aatcaatt 28083975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 3016263 - 3016183
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    |||||||||||||| ||||||  |||||||||||  ||||||| |||||| |  |||||||||||||||||||||| ||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaat 3016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 6021905 - 6021800
Alignment:
Q  112 tttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 211  Q
    ||||||||||||||||| ||   ||||||||||||| ||||| ||| ||||| || || ||| ||||||||||||||| | |||||||||| ||  ||||    
T  6021905 tttgtgtttggatacatgtaa--aagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaa 6021808  T
Q  212 tcaattct 219  Q
    || |||||    
T  6021807 tcgattct 6021800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 7790647 - 7790731
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    ||||||||||||| ||||||||||||||| || |||||| ||||||| ||| ||| ||||| || ||| ||  ||||||||||||    
T  7790647 aagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattct 7790731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 28287341 - 28287425
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||| |||||||| ||||||||| ||||  || ||||||||| |||||||||||| ||||||| |||| ||  |||| |||||||    
T  28287341 aagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattct 28287425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 30850404 - 30850468
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctag 199  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||| |||| ||| |||||||||    
T  30850404 aagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctag 30850468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 52059431 - 52059391
Alignment:
Q  112 tttgtgtttggatacatttatgtaagtgagttgaactataa 152  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  52059431 tttgtgtttgaatacatttatgtaagtgagttgaattataa 52059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 3416157 - 3416090
Alignment:
Q  138 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 205  Q
    |||||| ||||||||||||||||||| || ||||||||| ||| |||| ||| ||||| || ||||||    
T  3416157 tgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaa 3416090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 10324920 - 10324997
Alignment:
Q  114 tgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 189  Q
    ||||| |||||||||| ||||||  ||||||  ||| ||||||||| ||||| || |||||| |||||||||||||||    
T  10324920 tgtgtatggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagcta 10324997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 40662991 - 40663054
Alignment:
Q  140 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaa 205  Q
    ||||||| |||||||||||||||  |  |||||||| ||||||||||||| |||| ||||||||||    
T  40662991 agttgaattataaatttgtgtgttaa--tcaattcttgaatcaaaagctacaaatactagctttaa 40663054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 213522 - 213594
Alignment:
Q  117 gtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagc 187  Q
    |||||||| |||| ||||||  ||||||||||| | ||||||| || || || ||||||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagc 213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 2099667 - 2099778
Alignment:
Q  112 tttgtgtttggatacatttatgtaag---tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 208  Q
    |||||||||||||||||| || |||    |||||||| |||||||||| |||||  || ||||||||| || ||||| ||| |||||  ||||| ||| |    
T  2099667 tttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatcaattctataaccaaaatctacaaatctcagcttcaatta 2099766  T
Q  209 gaatcaattctg 220  Q
     |||||||||||    
T  2099767 caatcaattctg 2099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 48548998 - 48549099
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 213  Q
    ||||| |||||||||||||||  ||||||||||| ||||||  | || || || ||||||||||||||| |||||| || | ||||||| ||  ||||||    
T  48548998 tgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatc 48549095  T
Q  214 aatt 217  Q
    ||||    
T  48549096 aatt 48549099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 51500862 - 51500903
Alignment:
Q  158 tgtgtacaattcaattctagaatcaaaagctataaatcctag 199  Q
    |||||| || |||||||||||||||||||||| |||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctag 51500903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 34915167 - 34915092
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 189  Q
    |||||| ||||||| ||||||  |||||||||| |||||| | ||||||   | ||||||||||||||||||||||    
T  34915167 tgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagcta 34915092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 38797634 - 38797674
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattct 175  Q
    ||||||||||||||||||||||||||||  || ||||||||    
T  38797634 aagtgagttgaactataaatttgtgtgtgaaaatcaattct 38797674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 32818352 - 32818460
Alignment:
Q  114 tgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaa 211  Q
    |||||||||||||||| ||||||  || |||||||||||||||||||||| | || |||||||||||||||||||||| |||| ||||||| ||  ||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaa 32818451  T
Q  212 tcaattctg 220  Q
    |||||||||    
T  32818452 tcaattctg 32818460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 35065168 - 35065092
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 186  Q
    |||||||||||||||||| ||||||  |||||| ||  |||||||||||||||| || |||||||||||||||||||    
T  35065168 tttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaag 35065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 8604606 - 8604709
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 213  Q
    |||||||||||||| ||||||  |||  || ||||||||||||||||||  || |||||||||||||| ||||||| ||||| |||||| ||  ||||||    
T  8604606 tgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatc 8604705  T
Q  214 aatt 217  Q
    ||||    
T  8604706 aatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 21691192 - 21691301
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    |||||||||||||| ||| ||||||  ||| ||||||||||||||||||||||  || ||||||||| || ||||||||| ||||| ||| || ||   |    
T  21691192 tttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttg 21691291  T
Q  210 aatcaattct 219  Q
    ||||||||||    
T  21691292 aatcaattct 21691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 31012711 - 31012830
Alignment:
Q  105 aaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgt-acaattcaattctagaatcaaaagctataaatcctagct 201  Q
    ||||||||||||||||| |  |||||||||||   ||||||||||||||||| | ||||| | || ||||||||| ||| |||| ||| ||||||||| |    
T  31012711 aaagttgtttgtgtttgaacgcatttatgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagtt 31012810  T
Q  202 ttaatcagaatcaattctga 221  Q
    || |  ||||||||||||||    
T  31012811 ttgagtagaatcaattctga 31012830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 16552053 - 16551970
Alignment:
Q  119 ttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    ||||||||||| ||||||  |||||||||||||||||||||||||   || ||||||||||||  |||| ||| ||||||||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaactaaaaactacaaatcctagctt 16551970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 20712758 - 20712809
Alignment:
Q  76 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggataca 127  Q
    |||||||| |||||||||||||||| || |||||| ||||||||||||||||    
T  20712758 ttgattccgactaaaaatgagttgaaggtaaagttatttgtgtttggataca 20712809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 30357582 - 30357508
Alignment:
Q  145 aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    ||||||||||||||||||| || |||||| || |||||||||||| |||||  ||||| ||  ||||||||||||    
T  30357582 aactataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattct 30357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 42971912 - 42971966
Alignment:
Q  140 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    ||||||||||||||||||| |||| || ||||||||| || ||||||||||||||    
T  42971912 agttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaat 42971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 45011986 - 45011893
Alignment:
Q  105 aaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 196  Q
    ||||| ||||| ||||| ||||||| || |||  ||||||  || |||||||||||||||  || |||||||||||||||||||||| ||||||    
T  45011986 aaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatcc 45011893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 1616502 - 1616387
Alignment:
Q  105 aaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    ||||| ||||||||||| ||||||| ||||||   ||||||||||| ||||  |||||||   | |||||||||||||||||||||| ||||  |||| |    
T  1616502 aaagtggtttgtgtttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagc-t 1616404  T
Q  203 taatcagaatcaattct 219  Q
    |||  ||||||||||||    
T  1616403 taagtagaatcaattct 1616387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 4243467 - 4243414
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    |||||||| |||| ||||||||| ||||| || |||||||||||||||||||||    
T  4243467 aagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Original strand, 53713541 - 53713633
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||| ||||| ||||||  ||||||||||||||| || | | |||  || |||||| ||||||||||||||| ||||| ||||||    
T  53713541 tttgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagctt 53713633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 49138771 - 49138835
Alignment:
Q  138 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||||  |||||| || || |||||| |||||||||||| || ||||||||||||    
T  49138771 tgagttgaactataagcttgtgtataaaaatcaattttagaatcaaaagttacaaatcctagctt 49138835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 52965859 - 52965918
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    |||||||||||| ||||||||| |||||   | |||||| ||||||||||||||||||||    
T  52965859 aagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaat 52965918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 39386713 - 39386631
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    |||||||||||||| ||||| |||||||  || |||||| |||||| ||| | |||||||  |||||||||  ||||||||||    
T  39386713 aagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaatt 39386631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 10185293 - 10185221
Alignment:
Q  118 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    |||||||||||| ||||||  ||||||| ||| ||||||||| ||||| |  |||||| ||||||||||||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagct 10185221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 9064324 - 9064229
Alignment:
Q  124 tacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    |||||||||||||  |||||||||||  |||| ||| ||||  || |||||||||||||||||| ||| |||| |||| || ||  ||||||||||    
T  9064324 tacatttatgtaaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 27967431 - 27967491
Alignment:
Q  138 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 198  Q
    |||||||||||||||||||||| ||| || |||||| | |||| ||||  |||||||||||    
T  27967431 tgagttgaactataaatttgtgcgtaaaagtcaattattgaataaaaaattataaatccta 27967491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 45694718 - 45694643
Alignment:
Q  113 ttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 186  Q
    ||||||||||||||||| ||||||   |||||| |||||||||| |||||||   | ||||||||||||| |||||    
T  45694718 ttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaattaaaag 45694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 40491733 - 40491604
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 159  Q
    ||||||||||||| ||||||   ||||||| |||||||| || |||||  ||| | |||||||||||| ||||||  ||||||| |||| ||||||||||    
T  40491733 ttgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtg 40491634  T
Q  160 tgtacaattcaattctagaatcaaaagcta 189  Q
    |||| || ||||||||||||||||||||||    
T  40491633 tgtaaaagtcaattctagaatcaaaagcta 40491604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 41386820 - 41386906
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattctga 221  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||    
T  41386820 aagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctga 41386906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 45557506 - 45557361
Alignment:
Q  76 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaatt 173  Q
    |||||||  ||||||| |||||||| || |||||  |||||||||||||||||| ||||||  ||||||||| ||| ||||||||||||| || |||||     
T  45557506 ttgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatc 45557407  T
Q  174 ctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    ||||||| |||||||| | || |||||||  | || ||||||||||    
T  45557406 ctagaattaaaagctacagattctagcttctagcaaaatcaattct 45557361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 219
Target Start/End: Original strand, 38123619 - 38123755
Alignment:
Q  85 actaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatca 182  Q
    ||||||| |||||||| || |||||  |||||||| ||| ||||| ||||||  ||||||||| | ||||||||| ||||| || ||||||||||||| |    
T  38123619 actaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaatta 38123718  T
Q  183 aaagctataaatcctagctttaatcagaatcaattct 219  Q
     |||||| || | ||||||| ||  ||||||||||||    
T  38123719 gaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 42816450 - 42816533
Alignment:
Q  114 tgtgtttggatacatttatgta--agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 195  Q
    |||||||| ||||||| |||||  ||||| ||||| |||||||||||||||  || ||||||||||||| ||||| ||||||||    
T  42816450 tgtgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 45997764 - 45997707
Alignment:
Q  139 gagttgaactataaatttgtgt-gtacaattcaattctagaatcaaaagctataaatc 195  Q
    |||||||||||||||||||||| ||| || | |||| |||||||||||||||||||||    
T  45997764 gagttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatc 45997707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 27571960 - 27571889
Alignment:
Q  119 ttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    ||||||||||||||||||  ||||||||||  ||||| ||| ||||  || |||||||||||||||||||||    
T  27571960 ttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagct 27571889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 29842214 - 29842087
Alignment:
Q  89 aaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    |||||| ||||| || |||||  |||||||||||||| |||  |||||||||||||||||||| |  | |||||  || ||||||||||||| ||||||     
T  29842214 aaaatgggttgaaggtaaagtgatttgtgtttggatagattcgtgtaagtgagttgaactatataagtctgtgtgtaa-tcaattctagaattaaaagcc 29842116  T
Q  189 ataaatcctagctttaatcagaatcaatt 217  Q
    |  ||||||  ||||||  ||||||||||    
T  29842115 acgaatcctctctttaagtagaatcaatt 29842087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 31625495 - 31625420
Alignment:
Q  141 gttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 218  Q
    ||||||||||||||||| ||| | |  |||||| || || |||| |||| |||||||||||||||| |||||||||||    
T  31625495 gttgaactataaatttgcgtgaaaa--tcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattc 31625420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 32295289 - 32295237
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgt 162  Q
    |||||||||  ||||||||||||||  |||||||||| |||||||||||||||    
T  32295289 tttgtgttttaatacatttatgtaaaagtgagttgaattataaatttgtgtgt 32295237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 31708169 - 31708303
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtg 159  Q
    |||||| |||||| ||||||   ||||||| |||||||  |  ||||| ||||||||||||||||||| ||||||  |||||||||| ||||||||||||    
T  31708169 ttgattttgtaaaattgattaggactaaaagtgagttgctgataaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtg 31708268  T
Q  160 tgtacaattcaattctagaatcaaaagctataaat 194  Q
    |||   | |||||||||||||||||||||| ||||    
T  31708269 tgttagaatcaattctagaatcaaaagctacaaat 31708303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 32523344 - 32523408
Alignment:
Q  134 taagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 198  Q
    |||||||||| |||| |||||||||||||| || |||||| ||||||||||||||| ||||||||    
T  32523344 taagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatccta 32523408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 40147834 - 40147941
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatc 213  Q
    |||||||||||||| ||||||  ||||||||||  |||||||   ||||  || |||||||||||||||||||||  |||| ||||||| ||  ||||||    
T  40147834 tgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatc 40147933  T
Q  214 aattctga 221  Q
    ||||||||    
T  40147934 aattctga 40147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 52364131 - 52364047
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||||||||||||| ||||||| ||| |  || |||||| ||||||||||||||||||||| |||||| ||  |||| |||||||    
T  52364131 aagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattct 52364047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 31013173 - 31013039
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgta--agtgagttgaactataaatttgtg 159  Q
    |||||||  |||| |||||||| ||||||| |||||||  |  |||||  ||||||||||||| |||| |||||  ||||||||||| | ||||||||||    
T  31013173 ttgattccataaaattgattccgactaaaagtgagttgtagataaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtg 31013074  T
Q  160 tgtacaattcaattctagaatcaaaagctataaat 194  Q
    |||   | ||||||||||| ||||| |||| ||||    
T  31013073 tgttagaatcaattctagattcaaaggctacaaat 31013039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 46853523 - 46853592
Alignment:
Q  121 ggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    ||||| ||||||||||  ||||||||||| ||||||||| ||||  || |||||||||||||||||||||    
T  46853523 ggatatatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagct 46853592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 4526224 - 4526161
Alignment:
Q  125 acatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 186  Q
    ||||||||||||  ||| ||||||||||||||||||||||| || |||||| || |||||||||    
T  4526224 acatttatgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaag 4526161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 50550654 - 50550594
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatc 195  Q
    ||||||||  ||||||||||||||||||  || |||||| |||||||||||| ||||||||    
T  50550654 aagtgagtcaaactataaatttgtgtgtgaaaatcaattttagaatcaaaagttataaatc 50550594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 52141221 - 52141320
Alignment:
Q  105 aaagttgtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    ||||| ||||||||||  ||||||| || |||  |||||||||||||||| | |||||||  || | |||||||||||| || |||| ||||||||||||    
T  52141221 aaagtagtttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 37334964 - 37335093
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 159  Q
    |||||| | |||| |||||||| ||||||| |||||||| || |||||  ||| ||| || ||||||| || |||   |||||||||| || ||||   |    
T  37334964 ttgattatataaaattgattccgactaaaattgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaag 37335063  T
Q  160 tgtacaattcaattctagaatcaaaagcta 189  Q
    |||| || ||||||||||||||||||||||    
T  37335064 tgtaaaaatcaattctagaatcaaaagcta 37335093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 35264341 - 35264469
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 159  Q
    ||||||||||||| ||||||  ||| |||| ||||||||  | |||||   || ||||||| |||||| ||||||   ||| |||||| ||||||||  |    
T  35264341 ttgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaag 35264440  T
Q  160 tgtacaattcaattctagaatcaaaagct 188  Q
    |||  || |||||||||||||||||||||    
T  35264441 tgttaaaatcaattctagaatcaaaagct 35264469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 44771772 - 44771691
Alignment:
Q  137 gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattc 218  Q
    ||||||||||||  |||||  |||||| || |||||| ||||||||||||||| |||| |||| ||||   |||||||||||    
T  44771772 gtgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattc 44771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 31492839 - 31492788
Alignment:
Q  142 ttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    ||||| |||||||||||||||  ||| ||||||||||||||||||||| ||||    
T  31492839 ttgaattataaatttgtgtgttaaat-caattctagaatcaaaagctacaaat 31492788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 41596133 - 41596208
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagcta 189  Q
    |||||||||||||| ||| ||  ||||||  ||||||||| ||||||||| || ||||||||  ||||||||||||    
T  41596133 tgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagcta 41596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 11759789 - 11759913
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtg 159  Q
    |||||| |||||| ||||||   | ||||| |||||||| || ||| | ||||||||||| ||||| |||||||||  ||| |||||||||||||||||     
T  11759789 ttgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgtttgtatacacttatgtaagcgtgatttgaactataaatttgta 11759888  T
Q  160 tgtacaattcaattctagaatcaaa 184  Q
    |||| || |||||||||||||||||    
T  11759889 tgtaaaaatcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 16518909 - 16518774
Alignment:
Q  86 ctaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaa 183  Q
    |||||| ||||||||||| ||| |  |||||||||||||||||| ||||  ||||||||||||||||||||||||| ||| || || ||  || ||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtc-atcttataatcaa 16518811  T
Q  184 aagctataaatcctagctttaatcagaatcaattctg 220  Q
    |||||| |||||||| |||  |  |||||||||||||    
T  16518810 aagctacaaatcctatcttctagtagaatcaattctg 16518774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 33019136 - 33019245
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||| |||||  || ||||||||| || ||||||||| |||| ||||||| ||  |     
T  33019136 tttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatat 33019235  T
Q  210 aatcaattct 219  Q
    ||||||||||    
T  33019236 aatcaattct 33019245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 42741081 - 42740975
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    |||||||||| ||||||| ||||||  |||||||| ||  |||||||| ||||| || |||||||||||||||||||||| ||||| |||||| ||  ||    
T  42741081 tttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtag 42740983  T
Q  210 aatcaatt 217  Q
    ||||||||    
T  42740982 aatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 33502339 - 33502266
Alignment:
Q  112 tttgtgtttggatacatttatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 186  Q
    ||||||||||||||||||  |  |||||||||||||||||||| |||||||| || |||||| ||||||||||||    
T  33502339 tttgtgtttggatacattg-taaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaag 33502266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 32596095 - 32596020
Alignment:
Q  113 ttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaag 186  Q
    ||||||||||||| ||||||||||  |||||||||| ||| ||||||| |||| || |||||| ||||||||||||    
T  32596095 ttgtgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaag 32596020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 42982643 - 42982544
Alignment:
Q  118 tttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaa 215  Q
    |||||||||||| ||||||  |||||||| |  ||||||||||||||| || |||||||| ||||||||||||| || | ||||||| ||  ||||||||    
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 22536103 - 22536025
Alignment:
Q  112 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    |||||||||||||||||||||||  || |||||| |||||||||| |||||| | || | ||||||| |||||||||||    
T  22536103 tttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagct 22536025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 43501228 - 43501121
Alignment:
Q  112 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcag 209  Q
    |||||||||| ||||||| ||||||   ||||||||| ||||| ||||||| || ||| |||||||| |||||||||||| ||||||||| || ||  ||    
T  43501228 tttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgt-tagaat-caattctaaaatcaaaagctacaaatcctagtttcaagtag 43501131  T
Q  210 aatcaattct 219  Q
    ||||||||||    
T  43501130 aatcaattct 43501121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 33047562 - 33047650
Alignment:
Q  112 tttgtgtttggatacatttatgt--aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatccta 198  Q
    |||||||||||||||||||||||  ||||||| |||||  ||||||| | |||  || ||| ||||| |||||||||||| ||||||||    
T  33047562 tttgtgtttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatcatttctaaaatcaaaagctacaaatccta 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 44439355 - 44439281
Alignment:
Q  116 tgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagct 188  Q
    ||||||||||  |||||||||  ||||||||||| ||||||||| ||||  || |||||| ||||||||||||||    
T  44439355 tgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagct 44439281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 11504042 - 11504134
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagcttt 203  Q
    |||||||||  ||||||| ||||||  |||||||||||||||| |||||||||  ||  |||||||| |||||||| ||| |||||||| ||||    
T  11504042 tttgtgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgt-gaaaacaattctataatcaaaaactacaaatcctaacttt 11504134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 5533011 - 5533095
Alignment:
Q  112 tttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    ||||| ||||||||| || ||||||  |||||||||| ||||||||| |||||  || ||||||  |||||||||||||| ||||    
T  5533011 tttgtttttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaat 5533095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 13912892 - 13912800
Alignment:
Q  112 tttgtgtttggatacatttatgtaag--tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctt 202  Q
    |||||||||||||||| | ||||||   ||||||||||  |||||||||||||| || | ||||||||||| ||||  || |||| |||||||    
T  13912892 tttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagctt 13912800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 26032040 - 26032089
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaa 184  Q
    |||||||||||| ||||||||| ||||||||| ||||||  |||||||||    
T  26032040 aagtgagttgaagtataaatttatgtgtacaagtcaatttaagaatcaaa 26032089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 14043 - 14173
Alignment:
Q  61 tttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt--aagtgagttgaactataaatttgt 158  Q
    ||||||| |||||| |||||||   ||| || |||||||| || |||||  ||| |||||||||||||| ||||  ||||||||||||  |||||||||     
T  14043 tttgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttga 14142  T
Q  159 gtgtacaattcaattctagaatcaaaagcta 189  Q
    ||||| || ||||||||||||||| ||||||    
T  14143 gtgtaaaaatcaattctagaatcataagcta 14173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 6951286 - 6951392
Alignment:
Q  113 ttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcaga 210  Q
    |||| |||||||| ||| ||||||  |||| ||||| ||||||||| ||||||||| |||||| ||||||||||||||| |||||||| ||| ||  |||    
T  6951286 ttgtatttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtaga 6951385  T
Q  211 atcaatt 217  Q
    |||||||    
T  6951386 atcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 9818815 - 9818732
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaat-tcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||||||||||| ||||| |||||| ||  ||||||||||    
T  9818815 aagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatt 9818732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 38845549 - 38845441
Alignment:
Q  112 tttgtgtttggatacatttatgtaa---gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 208  Q
    |||||||||||||| ||| ||||||   ||||||| ||||||| ||||||||||  || |||||||||||||||||| ||| ||||| |||||| ||  |    
T  38845549 tttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagta 38845450  T
Q  209 gaatcaatt 217  Q
    |||||||||    
T  38845449 gaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 18851061 - 18851169
Alignment:
Q  111 gtttgtgtttggatacatttatgtaa--gtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatca 208  Q
    |||||||||||||||  || ||||||  ||||||| |||||||||| |||||||  || ||||||||| |||||||||||| ||||| |||||| ||  |    
T  18851061 gtttgtgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagta 18851160  T
Q  209 gaatcaatt 217  Q
    |||||||||    
T  18851161 gaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 22572410 - 22572493
Alignment:
Q  136 agtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    |||||||| |||||||||||||| | || |||||||||||| |||||||||||| |||||| ||||| ||  | ||||||||||    
T  22572410 agtgagttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattct 22572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 42858188 - 42858104
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaattct 219  Q
    ||||||||||||||||||||||||||||  || |||||| |||||| |||||||  |||||||| ||| ||  | ||||||||||    
T  42858188 aagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattct 42858104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 18637424 - 18637310
Alignment:
Q  76 ttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgt---aagtgagttgaactataaatttgtgtgtacaattcaat 172  Q
    ||||||| |||||||| ||||||||| | | |||  |||||||||||||| |||  | |   || |||||||||||||||||  ||||||| || |||||    
T  18637424 ttgattctaactaaaagtgagttgagagtacagtgatttgtgtttggatagattctttttaaaattgagttgaactataaat--gtgtgtaaaaatcaat 18637327  T
Q  173 tctagaatcaaaagcta 189  Q
    |||||||||||||||||    
T  18637326 tctagaatcaaaagcta 18637310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 370743 - 370797
Alignment:
Q  140 agttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaat 194  Q
    ||||||| ||||||||||||||||||| |||||| || |||||||||||| ||||    
T  370743 agttgaagtataaatttgtgtgtacaaatcaattttaaaatcaaaagctacaaat 370797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 14299481 - 14299328
Alignment:
Q  62 ttgattctgtaaatttgattccaactaaaaatgagttgagggcaaagttgtttgtgtttggatacatttatgtaa-gtgagttgaactataaatttgtgt 160  Q
    |||||| |||||| ||||||| |  ||||| |||||||| || |||||  |||||||||| |||||   |||||| |||| | ||||||||||||| |||    
T  14299481 ttgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgtttgaataca---atgtaaagtgaatcgaactataaatttatgt 14299385  T
Q  161 gtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaatt 217  Q
    ||  ||  |||||||||||| |||| ||| |||||||| ||| ||  ||||||||||    
T  14299384 gtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 28110443 - 28110504
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcc 196  Q
    ||||||||| ||||||||||||||||||  || ||||||||| ||||||||| || ||||||    
T  28110443 aagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatcc 28110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 22226241 - 22226322
Alignment:
Q  135 aagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagctttaatcagaatcaat 216  Q
    |||| ||| ||||| |||||||||||||| || | ||||||| |||||||||||| |||| ||| ||| ||  |||||||||    
T  22226241 aagttagtcgaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 31940 - 31839
Alignment:
Q  106 aagttgtttgtgtttggatacatttatgt--aagtgagttg---aactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagc 200  Q
    |||| ||||||||||||||||||||||||  ||||||||||   |||||||||| ||| |||  || ||||||| | |||||||||||| ||||||||||    
T  31940 aagtggtttgtgtttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagc 31841  T
Q  201 tt 202  Q
    ||    
T  31840 tt 31839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University