View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_low_2 (Length: 522)
Name: NF6343_low_2
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Complemental strand, 31089093 - 31088598
Alignment:
| Q |
9 |
agcagagaattgcagttaaatgtgtgctcaatcgtgactgcatcatggttttggcaacataaaaactgtcatgttgcagtggcgacttttatttaaaacc |
108 |
Q |
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| T |
31089093 |
agcagagaattgcagttaaatgtgtgctcaatcgtgactgcatcgtggttttggcaacataaaaactgtcatgttgcagtggcgacttttatttaaaacc |
31088994 |
T |
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| Q |
109 |
ttgaacatatcttccgtaaactcccccatagaagcaactgatagagtttatgataaggagttacccttcgttctttcctcgattagaaaaacatgtaata |
208 |
Q |
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| T |
31088993 |
ttgaacatatcttccgtaaactcccctatagaagcaactgatagagtttatgataaggagttacccttcgttctttcctcgattagaaaaacatgtaata |
31088894 |
T |
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| Q |
209 |
aacatttatcctgcataaacgctcattgaaactgttaaaatccaaataccttcttcataaacttctcttacaattttagtgatttgcactattaaaagag |
308 |
Q |
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| T |
31088893 |
aacatttatcctgcataaacactcattgaaactgttaaaatccaaataccttcttcataaacttctcttacaattttagtgatttgcagtattaaaagag |
31088794 |
T |
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| Q |
309 |
aaggagctaatttccatccccatatatacgcgctatgtttgaaacaggtggaagggaagacagtgaaggcacaaatatgggacactgcaggtcaagagag |
408 |
Q |
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| T |
31088793 |
aaggagctaatttccatccccatatatacgcgctatgtttgaaacaggtggaagggaagacagtaaaggcacaaatatgggacactgcaggtcaagagag |
31088694 |
T |
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| Q |
409 |
gtacagagcaatcacaagtgcatattatagaggagctgttggtgcattattggtgtatgatataaccaagagacaaacatttgagaatgtgcaaag |
504 |
Q |
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| T |
31088693 |
gtacagagcaatcacaagtgcatattacagaggagctgttggtgcattattggtgtacgacataaccaagagacaaacatttgagaatgtgcaaag |
31088598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 453
Target Start/End: Complemental strand, 4373132 - 4373086
Alignment:
| Q |
407 |
aggtacagagcaatcacaagtgcatattatagaggagctgttggtgc |
453 |
Q |
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| T |
4373132 |
aggtaccgagcaattacaagtgcatattatagaggagctgttggtgc |
4373086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 492
Target Start/End: Complemental strand, 11931334 - 11931221
Alignment:
| Q |
379 |
acaaatatgggacactgcaggtcaagagaggtacagagcaatcacaagtgcatattatagaggagctgttggtgcattattggtgtatgatataaccaag |
478 |
Q |
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| T |
11931334 |
acaaatatgggacacagcaggtcaagaaaggttcagatcaataacaagatcatattacagaaaagcagcaggtgcattactagtttatgatataactagg |
11931235 |
T |
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| Q |
479 |
agacaaacatttga |
492 |
Q |
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| T |
11931234 |
agagaaacatttga |
11931221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 11902579 - 11902472
Alignment:
| Q |
383 |
atatgggacactgcaggtcaagagaggtacagagcaatcacaagtgcatattatagaggagctgttggtgcattattggtgtatgatataaccaagagac |
482 |
Q |
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| T |
11902579 |
atatgggacacagcaggtcaagaaactttcagatcaataacaagatcatattatagaggagcagcaggggcattgcttgtttatgatataacaaagagag |
11902480 |
T |
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| Q |
483 |
aaacattt |
490 |
Q |
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| T |
11902479 |
aaacattt |
11902472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 498
Target Start/End: Complemental strand, 24248557 - 24248411
Alignment:
| Q |
352 |
acaggtggaagggaagacagtgaaggcacaaatatgggacactgcaggtcaagagaggtacagagcaatcacaagtgcatattatagaggagctgttggt |
451 |
Q |
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| T |
24248557 |
acaggtagagggaaagactgtaaaggcacagatctgggacacagcaggtcaggagcggtaccgtgccattactagtgcctattacagaggagctgttggt |
24248458 |
T |
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| Q |
452 |
gcattattggtgtatgatataaccaagagacaaacatttgagaatgt |
498 |
Q |
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| T |
24248457 |
gctctccttgtatatgacattaccaagaggcaaacctttgacaatgt |
24248411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 469
Target Start/End: Complemental strand, 30646913 - 30646860
Alignment:
| Q |
416 |
gcaatcacaagtgcatattatagaggagctgttggtgcattattggtgtatgat |
469 |
Q |
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| T |
30646913 |
gcaatcacaagtgcatattaccgaggagctgttggtgcattgcttgtgtatgat |
30646860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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