View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_low_21 (Length: 205)
Name: NF6343_low_21
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 27092611 - 27092440
Alignment:
| Q |
16 |
atctagaccgttacatagggttaaaatgcctaaaccttacggtcaaaatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagactt |
115 |
Q |
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| T |
27092611 |
atctggaccgttacatagggttaaaatgcctaaaccttactgtcaagatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagactt |
27092512 |
T |
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| Q |
116 |
gtaaactacattatgtttatataaattaaaaatcatgcttgatgtaaccgataatcaggtactccagagttc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27092511 |
gtaaactacattatgtttatataaattaaaaatcatgcttgatgtaaccgataatcaggtactccagagttc |
27092440 |
T |
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Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 27185690 - 27185861
Alignment:
| Q |
16 |
atctagaccgttacatagggttaaaatgcctaaaccttacggtcaaaatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagactt |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185690 |
atctggaccgttacatagggttaaaatgcctaaaccttactgtcaagatgtaccaattgcagtgattgtaagatattttgactgtgaaagacgcagactt |
27185789 |
T |
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| Q |
116 |
gtaaactacattatgtttatataaattaaaaatcatgcttgatgtaaccgataatcaggtactccagagttc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185790 |
gtaaactacattatgtttatataaattaaaaatcatgcttgatgtaaccgataatcaggtactccagagttc |
27185861 |
T |
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