View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_low_7 (Length: 386)
Name: NF6343_low_7
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 17348169 - 17347820
Alignment:
| Q |
17 |
cagagattagtggaaatgttggtttacttgacacacacattcggcgtatacggttagaacatgttctaaaaaatcgcaaagccactctagggagaggatt |
116 |
Q |
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| T |
17348169 |
cagagattagtggaaatgttggtttacttgacacacacattcggcgtatacagttagaacgtgttctaaaaaatcgcaaagccactcttgggagaggagt |
17348070 |
T |
|
| Q |
117 |
cttgtttaaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatgtaggtacaatgagtgatagaatatataactcaagctatagtacc |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
17348069 |
cttgtttaaaagaggtggaagttaaattatgaaggcttacactgatgttgattatgtaggtacaatgagtgatagaagatatacctcaagctatagtacc |
17347970 |
T |
|
| Q |
217 |
tatttgtgttgaaaccttgttgcttaaatgagtaaaaagaaaaacgtagttgctcaatgaagtgctaaagcttaattcaaagctatgacaaaagaaattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17347969 |
tatttgtgttgaaaccttgttgcttaaatgagtaaaaagaaaaacgtagttgctcaatgaagtgctaaagcttaattcaaagctatgacagaagaaattt |
17347870 |
T |
|
| Q |
317 |
gtgaactattatggatgaaacaagtgctagaagatttaaagatgaagtgc |
366 |
Q |
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| T |
17347869 |
gtgaactattatggacgaaacaagtgctaggagatttaaagatgaagtgc |
17347820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 34198952 - 34198999
Alignment:
| Q |
313 |
atttgtgaactattatggatgaaacaagtgctagaagatttaaagatg |
360 |
Q |
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| T |
34198952 |
atttgtggactattatggatgaaataagttctagaatatttaaagatg |
34198999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 359
Target Start/End: Original strand, 30996379 - 30996644
Alignment:
| Q |
93 |
caaagccactctagggagaggattcttgtttaaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatgtaggtacaatgagtgataga |
192 |
Q |
| |
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||||| ||||| ||||| | || ||||||| | |||||||||||||| || ||| |||||||||| ||||||||||| |||| |||||||||||| | |
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| T |
30996379 |
caaagtcactccagggatatgactcttgtt-acaagaggtggaagtctaactatagaggcttacactaatgttgattatacaggttcaatgagtgataaa |
30996477 |
T |
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| Q |
193 |
atatataactcaagctatagtacctatttgtgttgaaaccttgttgcttaaatgagtaaaaagaaaaacgtagttgctcaatgaagtgctaaagcttaat |
292 |
Q |
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| || || | | ||| ||| | |||||| | ||||||||||||| | |||||| ||| ||| |||||||| |||| ||| | |||| ||| |
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| T |
30996478 |
agatctacttgagaatattgtattttcttgtgtagcaaccttgttgctttgaggagtaagaagcaaacagtagttgcccaatcaagaattgaagcaaaat |
30996577 |
T |
|
| Q |
293 |
tcaaagctatgacaaaagaaatttgtgaactattatggatgaaacaagtgctagaagatttaaagat |
359 |
Q |
| |
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||| | |||||||| || ||||||||||||||||| |||||||||| ||||||||||||| ||||| |
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| T |
30996578 |
tcagatctatgacactaggaatttgtgaactattatagatgaaacaaatgctagaagatttgaagat |
30996644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 27471404 - 27471471
Alignment:
| Q |
123 |
taaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatgtaggtacaatgagtgata |
190 |
Q |
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| T |
27471404 |
taaaagaggtggaagtctaactatgaaggcttacaccaatgctgattatgcaggtttattgagtgata |
27471471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 13857013 - 13857068
Alignment:
| Q |
117 |
cttgtttaaaagaggtggaagtcaaattatgaaggcttacaccgatgttgattatg |
172 |
Q |
| |
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| T |
13857013 |
cttgtttaaaagaggtggaagtctaactgtggaggcttacaccgatgctgattatg |
13857068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 359
Target Start/End: Complemental strand, 32834920 - 32834791
Alignment:
| Q |
229 |
aaccttgttgcttaaatgagtaaaaagaaaaacgtagttgctcaatgaagtgctaaagcttaattcaaagctatgacaaaagaaatttgtgaactattat |
328 |
Q |
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||||||||||| | ||||||||| || | ||||| ||||||||| ||||| |||| | ||||| | || ||||| | ||| ||| ||||||||||| | |
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| T |
32834920 |
aaccttgttgcctgaatgagtaagaaatcagacgtaattgctcaatcaagtgttaaa-cataatttagagttatgatataaggaatgtgtgaactatttt |
32834822 |
T |
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| Q |
329 |
ggatgaaacaagtgctagaagatttaaagat |
359 |
Q |
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|||||||| ||||||||||| |||| ||||| |
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| T |
32834821 |
ggatgaaataagtgctagaatattttaagat |
32834791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 8390935 - 8390985
Alignment:
| Q |
309 |
agaaatttgtgaactattatggatgaaacaagtgctagaagatttaaagat |
359 |
Q |
| |
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|||||||||||| ||||| |||||||||||||||||| |||| | |||||| |
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| T |
8390935 |
agaaatttgtgagctattgtggatgaaacaagtgctaaaagactcaaagat |
8390985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 27470157 - 27470210
Alignment:
| Q |
94 |
aaagccactctagggagaggattcttgtttaaaagaggtggaagtcaaattatg |
147 |
Q |
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|||| ||||| | |||||||| |||||||||||||||||||||||| ||||||| |
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| T |
27470157 |
aaagtcactccaaggagaggactcttgtttaaaagaggtggaagtctaattatg |
27470210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 359
Target Start/End: Original strand, 27470374 - 27470421
Alignment:
| Q |
312 |
aatttgtgaactattatggatgaaacaagtgctagaagatttaaagat |
359 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||| ||||| |||| |
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| T |
27470374 |
aatttgtgaattattgtggatgaaacaagtgctagaaaatttatagat |
27470421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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