View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6343_low_9 (Length: 362)
Name: NF6343_low_9
Description: NF6343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6343_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 97 - 344
Target Start/End: Original strand, 35949317 - 35949564
Alignment:
| Q |
97 |
gttttatcaaatacacccacggtttgtttacctttacctacagattttttcgatcactatatgaagnnnnnnnnttgtaatgatgt--atagctaatatg |
194 |
Q |
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| T |
35949317 |
gttttatcacatacacccacggtttgtttacctttacctacagattttttctatcactatatgaagaaaaaaaattgtaatgatgtgtatagctaatatg |
35949416 |
T |
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| Q |
195 |
ttgctttccgtttgagagaagtttgtacaacacattatttgtgtttgaaaaatattatttactcgttttagctaatcttatgatatacgtatttcaataa |
294 |
Q |
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| T |
35949417 |
ttgctttccttttgaga--agtttgtacaacacattatttgtgtttgaaaaatattatttactcgtttaagctaatctgatgatataagtatttcaataa |
35949514 |
T |
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| Q |
295 |
ttgtatgaaaataacctatgatatataagatgagaaagaagttatctccc |
344 |
Q |
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| T |
35949515 |
ttgtatgaaaataacctatgatatatatgttgagaaagaagttctctccc |
35949564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 35949240 - 35949273
Alignment:
| Q |
19 |
gtatatacataaataattggaaacttttattatt |
52 |
Q |
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| T |
35949240 |
gtatatacatagataattggaaacttttattatt |
35949273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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