View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_high_7 (Length: 409)
Name: NF6344_high_7
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 44 - 402
Target Start/End: Original strand, 4271169 - 4271519
Alignment:
| Q |
44 |
gggaagtggagagagacgaatgagcaaagcgagtgagacctagcccttgcgcttggcctaatgagcatctggtccaattttttgttgtgggggcgactga |
143 |
Q |
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| T |
4271169 |
gggaagtggagagagacgaatgagcaaagcgagtgagacctagcccttgc---tggcctaatgaacatttggtccaattttttgttgtgggggcgactga |
4271265 |
T |
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| Q |
144 |
gggtgtgggatgcaaatgtcccacattacagttcactgtaaaccaaaatctttcgcaaataataaaatataattgccgctactttgtagtcggagatata |
243 |
Q |
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| T |
4271266 |
gggtgtgggaggcaaaggtcccacattacagttcactgtaaaccaaaatctttcgcaaataataaaacataattgccgctactttgtagtcggagacata |
4271365 |
T |
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| Q |
244 |
gacacaattggctgaacttcattaccgaacgtcatgtgtttgtttgcgataactgttccgttaatcttttgtaccagcttgttgttctagc-aatgacta |
342 |
Q |
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| T |
4271366 |
gacacatttggctgaacttcattaccgaacgtcatgtgtttgtttgtgataactgttccgttaatcttttgtaccag------attctagcaaatgacta |
4271459 |
T |
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| Q |
343 |
ataatcttgatttatttgtatcatcgtaatatagttttctgtcatcctagcttcatctca |
402 |
Q |
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| T |
4271460 |
ataatcttgatttatttgtatcatcgtaatatagttttctgtcatcttagcttcatctca |
4271519 |
T |
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Back To:
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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 31592834 - 31592893
Alignment:
| Q |
224 |
actttgtagtcggagatatagacacaattggctgaacttcattaccgaacgtcatgtgtt |
283 |
Q |
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| T |
31592834 |
actttgtagttggagagatagacacaattggccgaacttcataaccaaacatcatgtgtt |
31592893 |
T |
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