View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6344_high_9 (Length: 375)

Name: NF6344_high_9
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6344_high_9
NF6344_high_9
[»] chr6 (8 HSPs)
chr6 (1-360)||(29364178-29364537)
chr6 (30-235)||(29353869-29354078)
chr6 (30-247)||(29879718-29879942)
chr6 (329-360)||(24257753-24257784)
chr6 (329-360)||(24270730-24270761)
chr6 (329-360)||(29346015-29346046)
chr6 (329-360)||(29888470-29888501)
chr6 (329-360)||(29931715-29931746)
[»] chr5 (2 HSPs)
chr5 (27-192)||(27754246-27754411)
chr5 (255-309)||(27754459-27754514)
[»] scaffold0054 (2 HSPs)
scaffold0054 (113-234)||(58403-58527)
scaffold0054 (329-360)||(52349-52380)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 29364178 - 29364537
Alignment:
Q  1 tgacaaaaactcaaacttcatatcgatcgatcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctatttacaatcccaat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364178 tgacaaaaactcaaacctcatatcgatcgatcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctatttacaatcccaat 29364277  T
Q  101 aacgtgatttcagaaacagtggcttgtaacaacatataaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcactacagcataaat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364278 aacgtgatttcagaaacagtggcttgtaacaacatgtaaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcactacagcataaat 29364377  T
Q  201 aatcagttatcattctattttgatacttctgattcagagaagtaaatcgaaatcctggaagtgtgggcctcagtacaagtaaattttagcctacaaaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364378 aatcagttatcattctattttgatacttctgattcagagaagtaaatcgaaatcctggaagtgtgggcctcagtacaagtaaattttagcctacaaaatt 29364477  T
Q  301 tactacaacnnnnnnnctctactttaaatacactattttctaaatctactcatcttttgt 360  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  29364478 tactacaacaaaaaaactctactttaaatacactattttctaaatctactcatcttttgt 29364537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 29353869 - 29354078
Alignment:
Q  30 atcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctatt-tacaatcccaataacgtgatttcagaaacagtggcttgta 128  Q
    ||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||| ||||||  |||||||||||||||||||| |||    
T  29353869 atcataaaactaatatcatccatgcaatttacacacctgttataagtggaatatctatcgtacaatcacaataatatgatttcagaaacagtggctagta 29353968  T
Q  129 acaacatataaattttcagctggtgtttctaacc---agaagcaaaaatagtatgataatcactacagcataaataatcagttatcattctattttgata 225  Q
    ||| ||| || ||||||||||||| |||||||||   ||||||||||| |||| |||| | ||| || |||||||||| |||| ||||||||||||||||    
T  29353969 acagcatgtatattttcagctggtatttctaaccagaagaagcaaaaagagtaagatactaactgcaacataaataattagttgtcattctattttgata 29354068  T
Q  226 cttctgattc 235  Q
    ||||| ||||    
T  29354069 cttctaattc 29354078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 29879942 - 29879718
Alignment:
Q  30 atcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctatttacaatccca-----ataacgtgatttcagaaacagtggct 124  Q
    |||||||| |||||||| |||||||||||||||| |||||||| |||| ||||||||| || ||| | |     |||| || | |||||||| |||| ||    
T  29879942 atcataaatgtaatatcgtccatgcaatttacacacctgttataagtg-aatatctatctataatacaattaaaataatgttagttcagaaatagtgact 29879844  T
Q  125 tgtaacaacatataaattttcagctggtgtttctaaccagaa---gcaaaaatagtatgataatcactacagcataaataatcagttatcattctatttt 221  Q
     |||||| ||| || |||||||||| ||||||||||||||||   | ||||   ||| || ||| |||||| |||||||||||| || |||||||| |||    
T  29879843 agtaacatcatgtatattttcagctagtgtttctaaccagaacaaggaaaatgggtaagacaataactacaacataaataatcatttttcattctacttt 29879744  T
Q  222 gatacttctgattcagagaagtaaat 247  Q
    ||||||||||||||| | ||||||||    
T  29879743 gatacttctgattcataaaagtaaat 29879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 24257753 - 24257784
Alignment:
Q  329 tacactattttctaaatctactcatcttttgt 360  Q
    ||||||||||||||||||||||||||||||||    
T  24257753 tacactattttctaaatctactcatcttttgt 24257784  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 24270730 - 24270761
Alignment:
Q  329 tacactattttctaaatctactcatcttttgt 360  Q
    ||||||||||||||||||||||||||||||||    
T  24270730 tacactattttctaaatctactcatcttttgt 24270761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 29346015 - 29346046
Alignment:
Q  329 tacactattttctaaatctactcatcttttgt 360  Q
    ||||||||||||||||||||||||||||||||    
T  29346015 tacactattttctaaatctactcatcttttgt 29346046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Complemental strand, 29888501 - 29888470
Alignment:
Q  329 tacactattttctaaatctactcatcttttgt 360  Q
    ||||||||||||||||||||||||||||||||    
T  29888501 tacactattttctaaatctactcatcttttgt 29888470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Complemental strand, 29931746 - 29931715
Alignment:
Q  329 tacactattttctaaatctactcatcttttgt 360  Q
    ||||||||||||||||||||||||||||||||    
T  29931746 tacactattttctaaatctactcatcttttgt 29931715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 27754246 - 27754411
Alignment:
Q  27 tcgatcataaaagtaatatcatccatgcaatttacactcctgttatcagtggaatatctatttacaatcccaataacgtgatttcagaaacagtggcttg 126  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||||||||  |||||| |    
T  27754246 tcgatcataaaagcaatatcatccatgcaatttacactcctgctataagtagaatatctatatacaatcccaataacgtgatttcagaaatggtggctag 27754345  T
Q  127 taacaacatataaattttcagctggtgtttctaaccagaagcaaaaatagtatgataatcactaca 192  Q
    || || ||| ||||||||||||||||||||||||| ||| ||||||| |||| |||||| ||||||    
T  27754346 tagcagcatgtaaattttcagctggtgtttctaactagatgcaaaaagagtaagataataactaca 27754411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 27754459 - 27754514
Alignment:
Q  255 ctggaagtgtgggcctcagtacaagt-aaattttagcctacaaaatttactacaac 309  Q
    |||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||    
T  27754459 ctggaagtgtgggcctcattacaagtaaaattttagcctataagatttactacaac 27754514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 58403 - 58527
Alignment:
Q  113 gaaacagtggcttgtaacaacatataaattttcagctggtgtttctaaccagaa---gcaaaaatagtatgataatcactacagcataaataatcagtta 209  Q
    |||| ||||| | |||||| ||| || |||||| ||||||||||||||||||||   ||||||   ||| || ||| |||||| |||||||||||| |||    
T  58403 gaaatagtggttagtaacatcatgtatattttcggctggtgtttctaaccagaacaagcaaaatgggtaagacaataactacaacataaataatcactta 58502  T
Q  210 tcattctattttgatacttctgatt 234  Q
    |||||||||||||||| ||||||||    
T  58503 tcattctattttgataattctgatt 58527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 329 - 360
Target Start/End: Original strand, 52349 - 52380
Alignment:
Q  329 tacactattttctaaatctactcatcttttgt 360  Q
    ||||||||||||||||||||||||||||||||    
T  52349 tacactattttctaaatctactcatcttttgt 52380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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