View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_low_1 (Length: 588)
Name: NF6344_low_1
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 578
Target Start/End: Complemental strand, 37808547 - 37807986
Alignment:
| Q |
18 |
aaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808547 |
aaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact |
37808448 |
T |
|
| Q |
118 |
tcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaaatttgtac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808447 |
tcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaaatttgtac |
37808348 |
T |
|
| Q |
218 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808347 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
37808248 |
T |
|
| Q |
318 |
ctgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctgtaaagctcaaacatcatattcacataaaat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
37808247 |
ctgctcccattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaacttagcctgtaaacctcaaacatcatattcacaaaaaat |
37808148 |
T |
|
| Q |
418 |
attcgaccttaa-taaggaatatggatataactaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaaca |
516 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808147 |
attcgaccttaattaaggaatatggatataactaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaaca |
37808048 |
T |
|
| Q |
517 |
cccactatattattactgaagtccctatgttttggatccataagcccattttggttcctatg |
578 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37808047 |
cccactatattattactgaagtccctatgttttggatccataagcccattttggttcctatg |
37807986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 215 - 387
Target Start/End: Complemental strand, 37782973 - 37782801
Alignment:
| Q |
215 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggctt |
314 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
37782973 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggctt |
37782874 |
T |
|
| Q |
315 |
gaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctg |
387 |
Q |
| |
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||| ||| |||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
37782873 |
gaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttagcctg |
37782801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 207 - 377
Target Start/End: Complemental strand, 37792331 - 37792161
Alignment:
| Q |
207 |
taaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaac |
306 |
Q |
| |
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|||| ||||| ||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |
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| T |
37792331 |
taaagttgtatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaac |
37792232 |
T |
|
| Q |
307 |
aatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattca |
377 |
Q |
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|||||||||| ||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| |
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| T |
37792231 |
gatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattca |
37792161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 218 - 386
Target Start/End: Complemental strand, 37802012 - 37801844
Alignment:
| Q |
218 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
317 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |||||||||| |
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| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37801913 |
T |
|
| Q |
318 |
ctgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcct |
386 |
Q |
| |
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||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| ||||||| |
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|
| T |
37801912 |
ttgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattcattttagcct |
37801844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 37783303 - 37783204
Alignment:
| Q |
18 |
aaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact |
117 |
Q |
| |
|
||||| |||||| |||||| |||| |||||||||||||||| || |||| | |||||| | ||||| ||||||| |||||||||| | |||||||||||| |
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| T |
37783303 |
aaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaact |
37783204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 573
Target Start/End: Complemental strand, 37800756 - 37800634
Alignment:
| Q |
451 |
attaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttg |
550 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||| |||| |||| |||| |||||| |||| |||| || |||||||| ||||| ||||| | |
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| T |
37800756 |
attaagctaacctgaatgataaaccatagagaaaaaaagcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttgcg |
37800657 |
T |
|
| Q |
551 |
gatccataagcccattttggttc |
573 |
Q |
| |
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| |||||| |||||||||||||| |
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| T |
37800656 |
gctccatatgcccattttggttc |
37800634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 37781479 - 37781415
Alignment:
| Q |
456 |
gctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacaccca |
520 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||| |||| |||||||||| ||||| |
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|
| T |
37781479 |
gctaacctggataattaaccacaaagaaaaagagcaacaacttcctatggcacatggaataccca |
37781415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 573
Target Start/End: Complemental strand, 37789917 - 37789794
Alignment:
| Q |
450 |
aattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgtttt |
549 |
Q |
| |
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||||||||||||||| ||||| ||||| | |||||||||||| |||| |||| ||| || ||| |||| || |||||||||||||| ||||| | |
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| T |
37789917 |
aattaagctaacctgaatgataaaccaaagagaaaaagagcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgt |
37789818 |
T |
|
| Q |
550 |
ggatccataagcccattttggttc |
573 |
Q |
| |
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| |||||| |||||||||||||| |
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|
| T |
37789817 |
agttccatatgcccattttggttc |
37789794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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