View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_low_12 (Length: 250)
Name: NF6344_low_12
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 1548093 - 1548333
Alignment:
| Q |
10 |
tatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtgtgtctaataatcttcataattgactttccagtttaaaaactttc |
109 |
Q |
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| T |
1548093 |
tatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtgtgtctaataatcttcataattgactttccagtttaaaaactttc |
1548192 |
T |
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| Q |
110 |
tttagattgatcatgattcatcttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtggtgtgatatattcttc |
209 |
Q |
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| T |
1548193 |
tttagattgatcatgattcatcttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtggtgtgatatattcttc |
1548292 |
T |
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| Q |
210 |
tcagctaagaagccgagatacacaatacgatacagaaaaac |
250 |
Q |
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| T |
1548293 |
tcagctaagaagccgagatacacaatacgatacagaaaaac |
1548333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 1544232 - 1544479
Alignment:
| Q |
10 |
tatactctataagcttcaaattggaaaagttgtatctactattcctacaattggtgtgtctaataatcttcataa-ttgactttcca--------gttta |
100 |
Q |
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| T |
1544232 |
tatactctataagcttcaaattggaaaagttgtatctactattcctactgttggtgtgtctaataatcttcataaattgactttccaattttattgttta |
1544331 |
T |
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| Q |
101 |
aaaactttctttagattgatcatgattcatcttgcgttgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttacgtctgtggtgtgat |
200 |
Q |
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| T |
1544332 |
aaaactttctttggattgat-atgattcatcttgcattgcatccatttcatgtgttgtttctgcgttggtagctcaaggatgttaggtctgtgatgtgat |
1544430 |
T |
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| Q |
201 |
atattcttctcagctaagaagccgagatacacaatacgatacagaaaaa |
249 |
Q |
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| T |
1544431 |
atattcttctcagctaagaagccgagatacacagtacgacacagaaaaa |
1544479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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