View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6344_low_13 (Length: 239)
Name: NF6344_low_13
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 1548332 - 1548480
Alignment:
| Q |
1 |
acatttacatt-gctaattactcattaaaacagaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagtaac |
99 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1548332 |
acatttacatttgctaattactcattaaaactgaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagtaac |
1548431 |
T |
|
| Q |
100 |
atatgttggaaagtccgcctttattgtgatccgccccaaatcgcctaat |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1548432 |
atatgttggaaagtccgcctttattgtgatccgccccaaatcgcctaat |
1548480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 1544485 - 1544581
Alignment:
| Q |
7 |
acattgctaattactcattaaaacagaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagtaacatat |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1544485 |
acattgctaattactctttaaaacagaaacattagtcaatatatgatgattgcaattataatacttgtgagcataacaaataagcatagttacatat |
1544581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 1548590 - 1548662
Alignment:
| Q |
151 |
cagttgtgtctttaattgttgagaagcgttgaggatatatctgactaataatttttcttgccttgcaggtttc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1548590 |
cagttgtgtctttaattgttgagaagcgttgaagatatatctgactaataatttatcttgccttgcaggtttc |
1548662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 28909923 - 28909967
Alignment:
| Q |
103 |
tgttggaaagtccgcctttattgtgatccgccccaaatcgcctaa |
147 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| | |||||||| |
|
|
| T |
28909923 |
tgttggaaattccgcctttattgtggtccgcccctagtcgcctaa |
28909967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 30296520 - 30296564
Alignment:
| Q |
103 |
tgttggaaagtccgcctttattgtgatccgccccaaatcgcctaa |
147 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| | |||||||| |
|
|
| T |
30296520 |
tgttggaaattccgccttaattgtgatccgcccctagtcgcctaa |
30296564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University