View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_low_2 (Length: 541)
Name: NF6344_low_2
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 232 - 524
Target Start/End: Original strand, 45651341 - 45651633
Alignment:
| Q |
232 |
gctactccttctatctttagttaaaaggcaaatttgaggatggacagttggagaagattgacaaaaatatatcactttcttttaaattaaatgctgagga |
331 |
Q |
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| T |
45651341 |
gctactccttctatctttaattaaaaggcaaatttgaggatggacaattggagaggattgacaaaaatatatcactttcttttaaattaaatgctgagga |
45651440 |
T |
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| Q |
332 |
tggacaaaaaatatgagtttggttagatcacctcagatatttgagggtctacttccaaggacatagannnnnnnnaaagaattccaagagagatagatag |
431 |
Q |
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| T |
45651441 |
tggacaaaaaatatgagtttggttagatcacctcagatatttgagggtctacttccaaggacatagattttttttaaagaattccaagagagatagatag |
45651540 |
T |
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| Q |
432 |
aaaatatatgttacacactatatagaatatagatcactttctctacctttgtcttttgtgagtgattattgttattgacggcgagtttatagt |
524 |
Q |
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| T |
45651541 |
aaaatatatgttacacactatatagaatatagatcactttctctaactttgtcttttgtgagtgattattgttattgacggcgagtttatagt |
45651633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 45651123 - 45651231
Alignment:
| Q |
14 |
agaccgaacaacgtttcatatctttaaatttcaatgactttgatagataacttagtctctatcttaaccaattattatctcttcaaatactttattttaa |
113 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
45651123 |
agaccgaacaacgtttcatatctttgaatttcagtgactttgatagataacttagtctctatcttaatcaatttttatctcttcaaatactttattttaa |
45651222 |
T |
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| Q |
114 |
gatcgtgtt |
122 |
Q |
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| T |
45651223 |
gatcgtgtt |
45651231 |
T |
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