View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_low_3 (Length: 531)
Name: NF6344_low_3
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 343
Target Start/End: Complemental strand, 5303316 - 5302983
Alignment:
| Q |
14 |
atcatacacgagaaaagatacacatagtaacctaggaaattatcagatcaaaattaata---tttggtaattttgcataatacttagtaagtcactgatt |
110 |
Q |
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| T |
5303316 |
atcatacacgagaaaagatacacatagtaacctaggaaattatcagatcaaaattaatactatttggtaattttgcataatacttagtaagtcacttatt |
5303217 |
T |
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| Q |
111 |
t-gttagttctgtagaacttccacttatctccacttgaagataactcaagcacgtgttagtagtgttttgtttttggtgtacaaaaacatactatttcta |
209 |
Q |
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| T |
5303216 |
ttgttagttctgtagaacttccacttatctccacttgaagataactcaagcacgtgttagtagtgttttgtttttggtgtacaaaaacatactatttcta |
5303117 |
T |
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| Q |
210 |
tgggggaaaaacaacgtattactaacctaacagtgatataaagttgtttaccaagtaaaaagaaatagagtaacacgtggttaaaagtggaggctaaaag |
309 |
Q |
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| T |
5303116 |
tggggaaaaaacaacgtattactaacctaacagtgatataaagttgtttaccaagtaaaaagaaatagagtaacacgtggttaaaagtggaggctaaaag |
5303017 |
T |
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| Q |
310 |
tgcgattttcaaaataacggactaaattcggtag |
343 |
Q |
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| T |
5303016 |
tgcgattttcaaaataacggactaaattcggtag |
5302983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 357 - 513
Target Start/End: Complemental strand, 5302922 - 5302766
Alignment:
| Q |
357 |
tactttataacttattcaaaaatctcaaactaaaatattctatttcttgatagattcctatccaatattcaaatcaatgttctcacttccacaccccttc |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5302922 |
tactttataacttattcaaaaatctcaaactaaaatattctatttcttgatagattcctatccaatattcaaatcaatgttctcacttccgcaccccttc |
5302823 |
T |
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| Q |
457 |
ttcttcccattctcccctcttgggggagttcacagcctcgacctgtaacgctccacg |
513 |
Q |
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| T |
5302822 |
ttcttcccattctcccctcttgggggagttcacagcctcgacctgtaacgccccacg |
5302766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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