View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_low_4 (Length: 466)
Name: NF6344_low_4
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 24027738 - 24027303
Alignment:
| Q |
18 |
gtggcaaaattaacaacaacaaatgttgtttttaaagaagttttccagaatgtttgacaggtaacttatatgtacattataaatcttcatcaattttagt |
117 |
Q |
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| T |
24027738 |
gtggcaaaactaacaacaacaaatgttgtttttaaagaagttttccagaatgtttgacaggtaactaatatgaacattataaatcctcatcaattttagt |
24027639 |
T |
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| Q |
118 |
ttcattttaaatgnnnnnnngtactcctactaaattaaaactcatataaacaacaactctaaaatcttcacttacaatatatatcattttacacgcaggt |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027638 |
ttcattttaaatgtttttttgtactcctactaaattaaaactcatataaacaacaactctaaaatcttcacttacaatatatatcattttacacgcaggt |
24027539 |
T |
|
| Q |
218 |
gtgatgatccagctctttcagcatgtaatgaaattcatccctttttgaagtgcatcctggaaacaattaaacaatcattatgtcaagttttttatatatt |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027538 |
gtgatgatctagctctttcagcatgtaatgaaattcatccctttttgaagtgcatcctggaaacaattaaacaatcattatgtcaagttttttatatatt |
24027439 |
T |
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| Q |
318 |
tcctttaatgttatattccagttatctttttaactggattctataattatgtaatattcaactttaatataacatttgtaagacattgtctttatcagcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24027438 |
tcctttaatgttatattccagttatctttttaactggattctataattatgtaatattcaactttaatataacatttgtaagacattgtctttatcagcc |
24027339 |
T |
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| Q |
418 |
acgaatttctcatcatgtttctcaattaattttcct |
453 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24027338 |
acgaatttctcatcatgtttctcaattaattttcct |
24027303 |
T |
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