View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6344_low_5 (Length: 446)
Name: NF6344_low_5
Description: NF6344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6344_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 297 - 429
Target Start/End: Original strand, 17173390 - 17173522
Alignment:
| Q |
297 |
taaaagttatacatacaagtcataatagtaaacaagcattagttccatccacaagaaaacttagcaaaacaaaataactctaaatacagtcattaaaaca |
396 |
Q |
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| T |
17173390 |
taaaagtcatacatccaagtcataatagtaaacaagcattagttccatccacaagaaaacttagcaaaacaaaataactctaaatacagtcatcaaagca |
17173489 |
T |
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| Q |
397 |
atacaacacatcacaaaatacaagttaaataat |
429 |
Q |
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| T |
17173490 |
atacaacacatcacaaaatacaaattaaataat |
17173522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 17173025 - 17173087
Alignment:
| Q |
243 |
taccttaaaaagacataattatttagaccacatactgaaggtttcaagtctccataaaagtta |
305 |
Q |
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| T |
17173025 |
taccttaaaaagacataattatatagaccacatactaaaggtttcaagtctccataaaagtta |
17173087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 15961139 - 15961089
Alignment:
| Q |
22 |
ggttttacttttgattttcatttttgatggtcttaaccgtcactctgtata |
72 |
Q |
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| T |
15961139 |
ggttttacttttgatcttcacttttggtggtcttcaccgttactctgtata |
15961089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 34653198 - 34653238
Alignment:
| Q |
337 |
agttccatccacaagaaaacttagcaaaacaaaataactct |
377 |
Q |
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| T |
34653198 |
agttgcatccacaaggaaactaagcaaaacaaaataactct |
34653238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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