View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6345_high_5 (Length: 282)
Name: NF6345_high_5
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6345_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 37554914 - 37554653
Alignment:
| Q |
19 |
caacaacctcgatcaaatattttaatttggtaaaactgcctgaaattttaccagttaagttgtttcttgacactatataattgcatgtagtgaatttaac |
118 |
Q |
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| T |
37554914 |
caacaaccacgatcaaatattttaatttggtaaaactgcctgaaattttaccagttaagttgtttcttgacactatataattgcatgtagtgaatttaac |
37554815 |
T |
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| Q |
119 |
ttaccaagtgaatgactcaatgtgccatattgagaccttctctaggtaaattgattctcaataactgtgttattgtagatcaccccatgccatgcttctc |
218 |
Q |
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| T |
37554814 |
ttaccaagtgaatgactcaatgtgccat--tgagaccttctctaggcaaattgattctcaataactgtgttattgtagatcaccccatgccatgcttctc |
37554717 |
T |
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| Q |
219 |
cacaaagattgttactaacccacgtagcaataagagatggtggatagttcaaatgatggagaaa |
282 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37554716 |
cacaaagattgttactaacccacgtagcaagaagagatggtggatagttcaaatgatggagaaa |
37554653 |
T |
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