View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6345_high_8 (Length: 254)
Name: NF6345_high_8
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6345_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 55 - 240
Target Start/End: Complemental strand, 3472611 - 3472425
Alignment:
| Q |
55 |
gtgatgaaaactaaataatagcaatttactggcctaaaactacaattattatgtatttacaata-tttgagagtttttacctaaattacatgcaaaacaa |
153 |
Q |
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| T |
3472611 |
gtgatgaaaactaaataatagcaatttgctggcctaaaactacaattattatgtatttacaataatttgagagtttttacctaaattacatgcaaaacaa |
3472512 |
T |
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| Q |
154 |
gttaacaagtgctatgaaaattaacatgattttgacacttatgagatgccttgcagcactcattaaaactcgtaattatgatgatgg |
240 |
Q |
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| T |
3472511 |
gttaacaagtgctatgaaaattaacatgattttgacacttatcagataccttgcagcactcattaaaactcgaaattatgatgatgg |
3472425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 21545179 - 21545069
Alignment:
| Q |
86 |
gcctaaaactacaattattatgtatttacaatatttgaga-gtttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgatt |
184 |
Q |
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| T |
21545179 |
gcctaaaactactaatattatatatttacagtaaattagatgtgtttacctagattacttggaaaacaagtcaataagtgccatgcaaattatcaagaat |
21545080 |
T |
|
| Q |
185 |
ttgacacttat |
195 |
Q |
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| T |
21545079 |
ttgacacttat |
21545069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 1575925 - 1575993
Alignment:
| Q |
127 |
tttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgattttgacacttat |
195 |
Q |
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| T |
1575925 |
tttttacccatattacttgcaaaataagttaacaagtgttatggaaattaacatgattatgacacttat |
1575993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 32929777 - 32929853
Alignment:
| Q |
120 |
ttgagagtttttacctaaattacatgcaaaacaagtt-aacaagtgctatgaaaattaacatgattttgacacttat |
195 |
Q |
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| T |
32929777 |
ttgagggtttttatataaattacttgccaaacaagtttaataaatgttatgtaaactaacatgattttgacacttat |
32929853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 34273151 - 34273103
Alignment:
| Q |
147 |
aaaacaagttaacaagtgctatgaaaattaacatgattttgacacttat |
195 |
Q |
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| T |
34273151 |
aaaacaagttaacaagtgttatgaaaattaacataattttggcacttat |
34273103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 36525760 - 36525708
Alignment:
| Q |
138 |
attacatgcaaaacaagttaacaagtgctatgaaaattaacatgattttgaca |
190 |
Q |
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| T |
36525760 |
attacttgcgaaacaagttaataagtgctatgaaaataaacatgaatttgaca |
36525708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 21536042 - 21535984
Alignment:
| Q |
128 |
ttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgatttt |
186 |
Q |
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| T |
21536042 |
ttttacctagattacttgcaaaacaagtcaataagtgatatggaaatcaacatgatttt |
21535984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27874483 - 27874427
Alignment:
| Q |
127 |
tttttacctaaattacatgcaaaacaagttaacaagtgctatgaaaattaacatgat |
183 |
Q |
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||||||| || ||||| ||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
27874483 |
tttttacttagattacttgcaaaataagttaataagtgctatgaatattaacatgat |
27874427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 25006633 - 25006584
Alignment:
| Q |
146 |
caaaacaagttaacaagtgctatgaaaattaacatgattttgacacttat |
195 |
Q |
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|||||||||| || |||||||||| ||| ||||||||||||| ||||||| |
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| T |
25006633 |
caaaacaagtgaataagtgctatggaaactaacatgattttgtcacttat |
25006584 |
T |
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