View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6345_low_1 (Length: 444)
Name: NF6345_low_1
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6345_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 17581556 - 17581981
Alignment:
| Q |
1 |
cagtccttcttcgctttctagtatgagcccgaccctgcttcctttattgttagattatccatcggtgaagaccgtccaatttgtgcacaactcttagttg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17581556 |
cagtccttcttcgctttctagtatgagcccgaccctgcttcctttattgttagattacccatcggtgaagaccgtccaatttgtgcacaactcttagttg |
17581655 |
T |
|
| Q |
101 |
aagacagtacaacataacatcattaaatttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtcatttcattttgcaacaactcaact |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17581656 |
aagacaatacaacataacatcattaaatttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtcatttcattttgcaacaactcaact |
17581755 |
T |
|
| Q |
201 |
ccttgagtgtaaacaaaaacataccctccaaagttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttgg |
300 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17581756 |
ccttgagtgtaaacaaaaacacaccctccaaagttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacaaaattctatttcttgg |
17581855 |
T |
|
| Q |
301 |
atttaagccatttaagcaagccactatcaaatactgcaccgtaacttcttgtagcagaatcattgctaaccttcgtaacaaaaacaaatcactggtcatt |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17581856 |
atttaagccatttaagcaagccactatcaaatactgcaccgtaacttcttgtagcagaatcattgctaaccttcgtaacaaaaacaaatcactgg----- |
17581950 |
T |
|
| Q |
401 |
tgataaatatgccaagttagataatttgatgatg |
434 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |
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|
| T |
17581951 |
---taaatatgctaagttagataattttatgatg |
17581981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 17571927 - 17572070
Alignment:
| Q |
99 |
tgaagacagtacaacataacatcattaaatttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtcatttcattttgcaacaactcaa |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
17571927 |
tgaagaaagtacaacataacatcattaagtttacatggtttttagatatcaaatcccgaatcgaataaacttgaagtcatttcattttgcaacaagtcga |
17572026 |
T |
|
| Q |
199 |
ctccttgagtgtaaacaaaaacataccctccaaagttccaagat |
242 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
17572027 |
ctccttgagtgtaaaccaaaacccaccctccaaagttccaagat |
17572070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 17572720 - 17572808
Alignment:
| Q |
239 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactat |
327 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||| |
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|
| T |
17572720 |
agatgttgggaacttgtttaagctgccaaaacttacatagagaacagaattctctttcttggagtttagccatttaagcaagtcactat |
17572808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 17619992 - 17619904
Alignment:
| Q |
239 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactat |
327 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| |||||| |
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|
| T |
17619992 |
agatggtgggaacttgtttaagctgccaaaacttacatagataacagaattctctttcttggagtgcagccatttaagcaagtcactat |
17619904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 17602505 - 17602400
Alignment:
| Q |
128 |
tttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtc-atttcattttgcaacaactcaactccttgagtgtaaacaaaaacataccc |
226 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| ||||||| |||||| |||||||||| | |||||||||| ||||| |||||| | |||| |
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|
| T |
17602505 |
tttacatggtttttagacatcaaatcccaaatcgaataaacctgaagtcaatttcaatttgcaacaagttaactccttgattgtaagcaaaaatacaccc |
17602406 |
T |
|
| Q |
227 |
tccaaa |
232 |
Q |
| |
|
| |||| |
|
|
| T |
17602405 |
tacaaa |
17602400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 17572955 - 17573015
Alignment:
| Q |
324 |
ctatcaaatactgcaccgtaacttcttgtagcagaatcattgctaaccttcgtaacaaaaa |
384 |
Q |
| |
|
|||| ||||||||| || |||||||||||||| ||||||||| | |||||| ||||||||| |
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|
| T |
17572955 |
ctattaaatactgcgccataacttcttgtagctgaatcattgatcaccttcataacaaaaa |
17573015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 99 - 316
Target Start/End: Complemental strand, 14756618 - 14756401
Alignment:
| Q |
99 |
tgaagacagtacaacataacatcattaaatttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtcatttcattttgcaacaactcaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14756618 |
tgaagacagtacaacataacatcattaagtttacatggtttttagacatcaaataccgaatcgaataaacttgaagtcatttcattttgcaacaagtcaa |
14756519 |
T |
|
| Q |
199 |
ctccttgagtgtaaacaaaaacataccctccaaagttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttctt |
298 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14756518 |
ctccttgattgtaaacaaaaacacaccctccagagttccaagatgttgtaaacttgttctagctgccaaaacttacatagagaacagaattctatttctt |
14756419 |
T |
|
| Q |
299 |
ggatttaagccatttaag |
316 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
14756418 |
ggatttaagccatttaag |
14756401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 14709524 - 14709668
Alignment:
| Q |
99 |
tgaagacagtacaacataacatcattaaatttacatggtttttagacatcaaaacccgaatcgaataaactt-gaagtcatttcattttgcaacaactca |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||| |
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|
| T |
14709524 |
tgaagaaagtacaacataacatcattaagtttacatggtttttagacatcaaatcccgaatcaaataaacttggaagtcatttcattttgcaacaagtca |
14709623 |
T |
|
| Q |
198 |
actccttgagtgtaaacaaaaacataccctccaaagttccaagat |
242 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
14709624 |
actccttgagtgtaaaccaaaacccaccctccaaagttcgaagat |
14709668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 14710317 - 14710398
Alignment:
| Q |
239 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaag |
320 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||| |
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|
| T |
14710317 |
agatgttgggaacttgtttaagctgccaaaacttagatagagaacagaattctctttcttagagttaagccatttaagcaag |
14710398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 14755693 - 14755621
Alignment:
| Q |
31 |
gaccctgcttcctttattgttagattatccatcggtgaagaccgtccaatttgtgcacaactcttagttgaag |
103 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14755693 |
gaccttgcttcctctattgttagattacccatcggtgaagaccgtccaatttgtgcacaactcttagttgaag |
14755621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 14721686 - 14721791
Alignment:
| Q |
128 |
tttacatggtttttagacatcaaaacccgaatcgaataaacttgaagtc-atttcattttgcaacaactcaactccttgagtgtaaacaaaaacataccc |
226 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||||| ||||||| |||||| |||||||||| | |||||||||| ||||| |||||| | |||| |
|
|
| T |
14721686 |
tttacatggtttttagacatcagatcccaaatcgaataaacctgaagtcaatttcaatttgcaacaagttaactccttgattgtaagcaaaaatacaccc |
14721785 |
T |
|
| Q |
227 |
tccaaa |
232 |
Q |
| |
|
| |||| |
|
|
| T |
14721786 |
tacaaa |
14721791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 328
Target Start/End: Complemental strand, 12613510 - 12613421
Alignment:
| Q |
239 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactatc |
328 |
Q |
| |
|
||||| ||| |||||||| | ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| | |||||| |
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|
| T |
12613510 |
agatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaagccatttaaacaaactactatc |
12613421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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