View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6345_low_10 (Length: 251)
Name: NF6345_low_10
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6345_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3472738 - 3472995
Alignment:
| Q |
1 |
aaaatacttcgttggacgagctaggagtgagctgagagcgagcatggacaaagagttccagggagaaaagcaagagc-----------------aacatt |
83 |
Q |
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| T |
3472738 |
aaaatgcttcgttggacgagctaggagtgagctgagagcgagcatggacaaagagttccagggagaaaagcaagagcaacttcattggtcgagcaacatt |
3472837 |
T |
|
| Q |
84 |
tcaccaactaaggtataacaatttaatgactttgaaagatgagttgtcttttctctccatttgaagaaacctcgagtcgttgggcgagcaacatttcatc |
183 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3472838 |
tcgccaactaaggtataacaatttaatgactttgaaagatgagttgtcttctctctccatttgaagaaacctcgagtcgttgggtgagcaacatttcatc |
3472937 |
T |
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| Q |
184 |
cagcaaaactacattttctgccacttataaatagacttgtaaatagtttttagtataa |
241 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3472938 |
tagcgaaactacattttctgccacttataaatagacttgtaaatagtttttagtataa |
3472995 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 34273501 - 34273533
Alignment:
| Q |
196 |
attttctgccacttataaatagacttgtaaata |
228 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
34273501 |
attttctgtcacttataaatagacttgtaaata |
34273533 |
T |
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