View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6345_low_2 (Length: 419)

Name: NF6345_low_2
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6345_low_2
NF6345_low_2
[»] chr6 (25 HSPs)
chr6 (68-419)||(25195481-25195831)
chr6 (163-260)||(10564917-10565014)
chr6 (45-137)||(5724724-5724816)
chr6 (67-137)||(4910807-4910877)
chr6 (31-97)||(26280544-26280610)
chr6 (47-137)||(29240548-29240638)
chr6 (46-111)||(2008433-2008498)
chr6 (46-102)||(765481-765537)
chr6 (49-137)||(6896030-6896118)
chr6 (45-133)||(7952803-7952891)
chr6 (52-111)||(2002566-2002625)
chr6 (167-238)||(13687591-13687662)
chr6 (69-114)||(9922382-9922427)
chr6 (45-137)||(10400789-10400882)
chr6 (167-208)||(10874325-10874366)
chr6 (58-91)||(25195782-25195815)
chr6 (45-90)||(35098552-35098597)
chr6 (49-137)||(1499765-1499853)
chr6 (167-211)||(7486424-7486468)
chr6 (62-114)||(7952957-7953009)
chr6 (189-245)||(8092007-8092063)
chr6 (81-137)||(31710512-31710568)
chr6 (47-115)||(33136579-33136647)
chr6 (69-133)||(34620789-34620853)
chr6 (69-133)||(34748226-34748290)
[»] chr4 (29 HSPs)
chr4 (45-133)||(46344925-46345013)
chr4 (31-137)||(35064962-35065068)
chr4 (49-137)||(21691318-21691406)
chr4 (45-137)||(2635062-2635154)
chr4 (49-137)||(49138933-49139021)
chr4 (28-113)||(26617704-26617789)
chr4 (80-137)||(50061764-50061821)
chr4 (32-137)||(54705472-54705577)
chr4 (139-219)||(24921479-24921558)
chr4 (167-244)||(43628117-43628194)
chr4 (167-245)||(4014167-4014245)
chr4 (167-245)||(33560578-33560656)
chr4 (67-120)||(31013849-31013902)
chr4 (68-137)||(33456273-33456342)
chr4 (45-137)||(9082916-9083008)
chr4 (167-203)||(11271587-11271623)
chr4 (167-270)||(25319047-25319149)
chr4 (45-113)||(25405511-25405578)
chr4 (168-248)||(35995229-35995308)
chr4 (45-137)||(41058825-41058917)
chr4 (174-244)||(22683870-22683940)
chr4 (68-137)||(2326928-2326997)
chr4 (47-127)||(9134518-9134599)
chr4 (68-137)||(16551856-16551925)
chr4 (42-91)||(22250171-22250220)
chr4 (46-111)||(25318743-25318807)
chr4 (68-97)||(39211089-39211118)
chr4 (49-86)||(52341892-52341929)
chr4 (167-219)||(29904013-29904065)
[»] chr1 (21 HSPs)
chr1 (46-137)||(28083983-28084074)
chr1 (47-115)||(47892484-47892552)
chr1 (45-89)||(646127-646171)
chr1 (185-280)||(48832907-48833001)
chr1 (66-128)||(36780232-36780294)
chr1 (162-250)||(32088578-32088664)
chr1 (68-133)||(45660866-45660930)
chr1 (69-137)||(30557415-30557483)
chr1 (170-221)||(5407803-5407854)
chr1 (28-111)||(47321983-47322066)
chr1 (169-211)||(10324766-10324808)
chr1 (162-244)||(39289272-39289354)
chr1 (190-248)||(50845180-50845238)
chr1 (213-282)||(2099659-2099728)
chr1 (68-137)||(15478118-15478187)
chr1 (69-122)||(30234608-30234661)
chr1 (31-136)||(31362281-31362386)
chr1 (167-244)||(35592496-35592572)
chr1 (69-137)||(8381883-8381951)
chr1 (46-110)||(24587835-24587899)
chr1 (69-137)||(35681829-35681897)
[»] scaffold0168 (1 HSPs)
scaffold0168 (28-137)||(31725-31834)
[»] chr2 (23 HSPs)
chr2 (167-264)||(37561706-37561801)
chr2 (49-112)||(15928532-15928595)
chr2 (174-248)||(32827519-32827594)
chr2 (72-137)||(33047673-33047738)
chr2 (167-219)||(44810374-44810426)
chr2 (167-217)||(3654930-3654980)
chr2 (45-93)||(7630359-7630407)
chr2 (66-114)||(8481389-8481437)
chr2 (31-111)||(31453309-31453388)
chr2 (66-138)||(32595894-32595966)
chr2 (167-218)||(29823508-29823559)
chr2 (45-136)||(30503109-30503200)
chr2 (167-308)||(33502791-33502934)
chr2 (49-96)||(43501083-43501130)
chr2 (63-137)||(11759932-11760006)
chr2 (167-217)||(37402269-37402319)
chr2 (167-245)||(44439253-44439331)
chr2 (68-137)||(9943322-9943391)
chr2 (174-219)||(28028848-28028893)
chr2 (69-137)||(7629761-7629829)
chr2 (167-203)||(43073975-43074011)
chr2 (167-203)||(43501125-43501160)
chr2 (49-113)||(43717265-43717329)
[»] scaffold0314 (1 HSPs)
scaffold0314 (69-137)||(17325-17393)
[»] chr8 (17 HSPs)
chr8 (31-91)||(32927837-32927897)
chr8 (80-137)||(44141186-44141243)
chr8 (49-137)||(15677896-15677984)
chr8 (49-137)||(32100972-32101060)
chr8 (168-211)||(39648381-39648424)
chr8 (66-116)||(13384769-13384819)
chr8 (31-113)||(42455835-42455917)
chr8 (168-240)||(11791746-11791818)
chr8 (69-137)||(39648263-39648331)
chr8 (46-113)||(29911983-29912050)
chr8 (48-111)||(33184063-33184126)
chr8 (46-133)||(37684308-37684395)
chr8 (49-111)||(32994322-32994384)
chr8 (45-90)||(5997377-5997422)
chr8 (167-203)||(1836262-1836298)
chr8 (49-113)||(35525335-35525399)
chr8 (45-137)||(41614743-41614835)
[»] chr3 (19 HSPs)
chr3 (46-115)||(50321853-50321922)
chr3 (39-115)||(12674934-12675010)
chr3 (68-137)||(1290680-1290749)
chr3 (84-137)||(52363964-52364017)
chr3 (49-137)||(3845210-3845298)
chr3 (167-219)||(21513380-21513432)
chr3 (46-137)||(1441476-1441567)
chr3 (49-116)||(54596738-54596805)
chr3 (167-217)||(23290292-23290342)
chr3 (167-217)||(49634075-49634125)
chr3 (67-137)||(52141361-52141431)
chr3 (68-134)||(52925728-52925794)
chr3 (69-138)||(3776437-3776506)
chr3 (169-242)||(7298328-7298400)
chr3 (46-138)||(8801848-8801940)
chr3 (70-112)||(38332656-38332698)
chr3 (45-137)||(46943381-46943474)
chr3 (48-88)||(830149-830189)
chr3 (46-114)||(46943094-46943161)
[»] chr5 (26 HSPs)
chr5 (46-137)||(22226331-22226422)
chr5 (43-137)||(11647981-11648075)
chr5 (49-115)||(25548439-25548505)
chr5 (167-245)||(42439625-42439703)
chr5 (68-137)||(18851199-18851268)
chr5 (169-245)||(12432961-12433037)
chr5 (49-137)||(39097163-39097251)
chr5 (165-280)||(35439113-35439227)
chr5 (47-137)||(6949581-6949671)
chr5 (84-137)||(38845644-38845697)
chr5 (49-137)||(370808-370896)
chr5 (167-219)||(3970434-3970486)
chr5 (69-113)||(12404997-12405041)
chr5 (69-137)||(15368142-15368210)
chr5 (68-135)||(3043121-3043188)
chr5 (45-112)||(27374385-27374452)
chr5 (167-218)||(34195211-34195262)
chr5 (167-205)||(1102133-1102171)
chr5 (46-132)||(29922798-29922884)
chr5 (167-245)||(29923241-29923319)
chr5 (72-114)||(35108161-35108203)
chr5 (167-241)||(42194543-42194617)
chr5 (45-97)||(1105378-1105430)
chr5 (167-219)||(11599632-11599684)
chr5 (55-91)||(15955447-15955483)
chr5 (167-231)||(17862505-17862569)
[»] chr7 (13 HSPs)
chr7 (167-245)||(18349774-18349852)
chr7 (45-111)||(12306902-12306968)
chr7 (66-111)||(45997431-45997476)
chr7 (167-211)||(36271329-36271373)
chr7 (47-175)||(5267774-5267907)
chr7 (49-91)||(17111820-17111862)
chr7 (167-245)||(42675058-42675136)
chr7 (75-137)||(46325574-46325636)
chr7 (69-138)||(45004883-45004952)
chr7 (49-106)||(48159016-48159073)
chr7 (45-97)||(12306673-12306725)
chr7 (49-97)||(31486777-31486825)
chr7 (69-137)||(38123766-38123834)
[»] scaffold0197 (1 HSPs)
scaffold0197 (78-133)||(31542-31597)
[»] scaffold0024 (1 HSPs)
scaffold0024 (170-245)||(23601-23675)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 68 - 419
Target Start/End: Original strand, 25195481 - 25195831
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaattttggtttcaagtttggaggaggcaaatt 167  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195481 caaccaaacatgtcagaatcaattatacacatccagaatcaattttggttcctctagaagtggaaccaaattttggtttcaagtttggaggaggcaaatt 25195580  T
Q  168 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatcaaa 267  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25195581 tgattctaacttgaaactaggatctgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatcaaa 25195680  T
Q  268 acacaaaccacttttgactaaaatcaactttacaaaatcaattctgcataactaaacacacaaattcaaacttaagtttgctccattactagaggggcca 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25195681 acacaaaccacttttgactaaaatcaactttacaaaatcaattctgcagaactaaacacacaaattcaaacttaagtttgctccactactagaggggcca 25195780  T
Q  368 aaattgattctgacatgttttgattgtttttgagtactagtaaaattgattt 419  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||    
T  25195781 aaattgattctgacatg-tttggttgtttttgagtaatagtaaaattgattt 25195831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 260
Target Start/End: Complemental strand, 10565014 - 10564917
Alignment:
Q  163 aaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatg 260  Q
    ||||| ||||||||||||||  |||||||||||||||||||||| ||| |||||||| |  ||||| || |||||||||||| ||| |||||| ||||    
T  10565014 aaattcgattctaacttgaagttaggatttgtagcttttgactcaaaatgtgattttaacgctaaagtttattgttcaactccttttttatgtaaatg 10564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 5724724 - 5724816
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||||   ||| || ||||||||||||||||||||| ||||| || | ||| ||||||||  ||||||||||||||||||||    
T  5724724 gcaaaatcaattctacctgaaagcatccaaacatgtcagaatcaattctacacttctagaattaattttggcccctctagaagtggaaccaaa 5724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 4910877 - 4910807
Alignment:
Q  67 acaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||||||||||||| ||||||| || |||||||| | ||  ||||| |||||||||||||    
T  4910877 acaaccaaacatgtcagaatcaattctacacattcagaatcaattatagtctctctaaaagtggaaccaaa 4910807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 26280610 - 26280544
Alignment:
Q  31 aatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacac 97  Q
    |||||| | |||| ||||||||||||||||  |||||||| ||||||||||| |||||||| |||||    
T  26280610 aatcaattcttgaggcaaaatcaattctaccaaaaaacaatcaaacatgtcaaaatcaattctacac 26280544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 29240548 - 29240638
Alignment:
Q  47 aaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||||  |||| | || ||||||||| |||||||| ||||| || | ||||||||||| |||| | | |||||||||||||    
T  29240548 aaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaa 29240638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 2008433 - 2008498
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    |||||| |||||||||  ||||||| |||||||||||||| ||||| ||||| |||| ||||||||    
T  2008433 caaaatgaattctactcgaaaacaatcaaacatgtcagaaacaattctacacctccaaaatcaatt 2008498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 765481 - 765537
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatcca 102  Q
    ||||| || ||||||| |||| |||||||||| ||||||||||||| ||||||||||    
T  765481 caaaaccagttctacttaaaagcaaccaaacacgtcagaatcaattctacacatcca 765537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 6896030 - 6896118
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||| ||||  | ||||||||||||||||| |||||||| ||||  |||| ||||| |||| ||  || ||||||||||||||||    
T  6896030 aatcaattgtactcgacaacaaccaaacatgtcataatcaattctacatctccagaatcattttttgtcactttagaagtggaaccaaa 6896118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 7952803 - 7952891
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    ||||||| || || ||| |||| ||| ||||||||||| |||||||| ||||| |||||||| |||||| |   |||||||||||||||    
T  7952803 gcaaaattaaatcaactcaaaaccaatcaaacatgtcataatcaattttacacctccataattaattttagcctctctagaagtggaac 7952891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 2002566 - 2002625
Alignment:
Q  52 caattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    ||||||||||  ||||||||||||||||||| |||||||| ||| | |||| ||||||||    
T  2002566 caattctactcgaaaacaaccaaacatgtcaaaatcaattctacgcctccaaaatcaatt 2002625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 13687591 - 13687662
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgtt 238  Q
    ||||||||||||||||  ||||| ||||||||| || |||||||  ||||||||| ||| ||||| ||||||    
T  13687591 ttgattctaacttgaagataggacttgtagcttctgtctccaaatatgattttcacactcaaatttattgtt 13687662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 9922427 - 9922382
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttg 114  Q
    |||||||||| ||| ||||||||||||||||| | |||||||||||    
T  9922427 aaccaaacatatcaaaatcaattatacacatcaagaatcaattttg 9922382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 10400789 - 10400882
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaa-ccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||| ||||||||||  ||| ||| |||||||| ||| |||||||||||||| || | |||||||||||  ||||| |  ||||||||||||    
T  10400789 gcaaaaacaattctactcgaaagcaaaccaaacatatcaaaatcaattatacacctctagaatcaattttgcatcctccaagagtggaaccaaa 10400882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 10874366 - 10874325
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactcca 208  Q
    |||||||||||||||||| |  ||||||||||||||||||||    
T  10874366 ttgattctaacttgaaacaataatttgtagcttttgactcca 10874325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 25195815 - 25195782
Alignment:
Q  58 tactgaaaaacaaccaaacatgtcagaatcaatt 91  Q
    |||| |||||||||||||||||||||||||||||    
T  25195815 tactcaaaaacaaccaaacatgtcagaatcaatt 25195782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 35098552 - 35098597
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaat 90  Q
    ||||||||||||||||| ||||  |||||||||||||| |||||||    
T  35098552 gcaaaatcaattctactcaaaagtaaccaaacatgtcaaaatcaat 35098597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 1499853 - 1499765
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||  | | ||| |||||||| || |||||||| ||||| | |||||| ||||||||| ||  |||||||| |||||||    
T  1499853 aatcaattctactctacagcaatcaaacatgccataatcaattctacacttacataattaattttggtcccaatagaagtgaaaccaaa 1499765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 7486424 - 7486468
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaac 211  Q
    |||||| ||||||||||||| ||||||||| ||||| ||||||||    
T  7486424 ttgattttaacttgaaactatgatttgtagtttttgcctccaaac 7486468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 7952957 - 7953009
Alignment:
Q  62 gaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttg 114  Q
    ||||| ||||||||||||||||||||| || ||||| |||| | |||||||||    
T  7952957 gaaaaccaaccaaacatgtcagaatcagttttacacctccaaactcaattttg 7953009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 8092063 - 8092007
Alignment:
Q  189 atttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    ||||||| ||||||  || |||||||||||| |||||||| || |||||||||||||    
T  8092063 atttgtaccttttgtgtctaaacgtgatttttatactaaagtttattgttcaactca 8092007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 31710512 - 31710568
Alignment:
Q  81 cagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||| |||||||||| |||||||| ||||  ||||| ||| |||||||||    
T  31710512 cagaatcaattctacacatccacaatcaattatggtctctctaaaagaggaaccaaa 31710568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 33136579 - 33136647
Alignment:
Q  47 aaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 115  Q
    |||||||||| ||||  | | ||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  33136579 aaaatcaattatactcgagagcaaccaaacatgtcaaaatcaattatacacctctagaattaattttgg 33136647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 34620853 - 34620789
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    |||||||||||||| |||||||| ||||| |  | |||||||||||| ||||| | |||||||||    
T  34620853 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaac 34620789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 34748290 - 34748226
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    |||||||||||||| |||||||| ||||| |  | |||||||||||| ||||| | |||||||||    
T  34748290 aaccaaacatgtcaaaatcaattctacacctttagaatcaattttgggtcctccaaaagtggaac 34748226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 46344925 - 46345013
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    |||||||||||| ||||  ||| ||||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||||||||    
T  46344925 gcaaaatcaattatacttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaattttgggccctctagaagtggaac 46345013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 35065068 - 35064962
Alignment:
Q  31 aatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtgg 130  Q
    |||||| |||||| |||||||||||||||||  ||| |||||||| |||||| |||||||| ||||| ||||||||||||||||   |||| ||||||||    
T  35065068 aatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgtcataatcaattctacacctccataatcaattttgacccctcgagaagtgg 35064969  T
Q  131 aaccaaa 137  Q
    |||||||    
T  35064968 aaccaaa 35064962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 21691318 - 21691406
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||| |||||  | |||||||||| ||||||||||||||| ||||| |||| |||||||| |||| ||||||||||||||||||||    
T  21691318 aatcaatactactcgacaacaaccaaatatgtcagaatcaattctacacctccagaatcaattctggtccctctagaagtggaaccaaa 21691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 2635154 - 2635062
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||| ||||||| |||| ||| ||||||||||| |||||||| ||||| || | ||||||||||||| |||||| ||||| |||||||    
T  2635154 gcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttggtccctctaaaagtgaaaccaaa 2635062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 49138933 - 49139021
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||| ||||  |||||||||||||||||||||||||||| ||||| || | ||||||||||||   || ||||||||||||||||    
T  49138933 aatcaattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggccactttagaagtggaaccaaa 49139021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 26617704 - 26617789
Alignment:
Q  28 tataatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    |||| |||| ||| || ||||||||||||||| |||||| || |||||||||||| |||||||| |||||||| | ||||||||||    
T  26617704 tatattcaattatggaggcaaaatcaattctattgaaaagcatccaaacatgtcaaaatcaattttacacatctagaatcaatttt 26617789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 50061764 - 50061821
Alignment:
Q  80 tcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  50061764 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaa 50061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 54705472 - 54705577
Alignment:
Q  32 atcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtgga 131  Q
    ||||| |||||| |||||||||||| ||||    | |||||||||||||| |||||||||||| || | ||||  |||||||||  ||||||||||||||    
T  54705472 atcaattattgaggcaaaatcaattatacttgtgagcaaccaaacatgtctgaatcaattatataccttcatagccaattttggcccctctagaagtgga 54705571  T
Q  132 accaaa 137  Q
    ||||||    
T  54705572 accaaa 54705577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 24921558 - 24921479
Alignment:
Q  139 tttggtttcaagtttggaggaggcaaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    ||||||||||| |||| | |||||||| ||||||||||||||||||| | ||||||||||||||||| || || |||||||    
T  24921558 tttggtttcaa-tttgaatgaggcaaaattgattctaacttgaaacttgaatttgtagcttttgacttcatacatgatttt 24921479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 43628117 - 43628194
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 244  Q
    |||||||||| ||||| ||| ||||||||| |||||||||||||| ||||||| | | | ||||| ||||||||||||    
T  43628117 ttgattctaagttgaagctaagatttgtagattttgactccaaacatgattttaacatttaaatttattgttcaactc 43628194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 4014167 - 4014245
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||||||| ||| |||||  | ||||||||||||||||| ||||| | | ||||||| || ||||||||||    
T  4014167 ttgattctaacttgaagctatgatttaaatcttttgactccaaacgtaatttttacagtaaaatttatggttcaactca 4014245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 33560656 - 33560578
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||   || |||||||||||||||||||| || ||| |||||||| | ||| | |||||||||||||||||    
T  33560656 ttgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgatttttaaactgacattcattgttcaactca 33560578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 31013849 - 31013902
Alignment:
Q  67 acaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcct 120  Q
    |||||||||||||||| |||||||| |||||||| | |||||||| ||||||||    
T  31013849 acaaccaaacatgtcaaaatcaattttacacatctaaaatcaattatggttcct 31013902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 33456342 - 33456273
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||| ||| |||||| |||||||| ||||||| || |||||||| | || ||||||||||||||||||||    
T  33456342 caacaaaatatgtcataatcaattctacacattcaaaatcaattatagtccctctagaagtggaaccaaa 33456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 9082916 - 9083008
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||| |  | |||| |||||||||||||||| |||| ||  ||||   ||||||||||  |||||| |||||||||||||||    
T  9082916 gcaaaatcaattctatttcagaacatccaaacatgtcagaattaattctatgcatctgaaatcaattttccttcctccagaagtggaaccaaa 9083008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 11271623 - 11271587
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttga 203  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11271623 ttgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 270
Target Start/End: Original strand, 25319047 - 25319149
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtga-ttttcatactaaaattcattgttcaactcatttcttatgtgaatgtatca 265  Q
    ||||||||||||||||  ||||||||||||| ||||| || ||| |||| |||| ||||| ||||| ||||||||||||| || ||| || ||||||||     
T  25319047 ttgattctaacttgaaggtaggatttgtagc-tttgagtctaaatgtgattttttatactgaaatttattgttcaactcactt-ttacgtaaatgtatcg 25319144  T
Q  266 aaaca 270  Q
    |||||    
T  25319145 aaaca 25319149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 25405578 - 25405511
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    ||||||||||||||||  |||| ||||||||||||| ||||||| |  ||||| |||||||||||||||    
T  25405578 gcaaaatcaattctacccaaaa-caaccaaacatgtgagaatcattcctacacctccataatcaatttt 25405511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 35995229 - 35995308
Alignment:
Q  168 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 248  Q
    ||||||||||||||| || ||||| |||| ||| |||| ||||| | ||||||| ||| ||||| ||||||||||||||||    
T  35995229 tgattctaacttgaagctcggattggtagttttagacttcaaacttaattttcacactcaaatt-attgttcaactcattt 35995308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 41058917 - 41058825
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||| ||||  |||||| |||||||||||| |||||||| ||| | |  | ||||||||| || || |||| |||||||||||||    
T  41058917 gcaaaatcaattttactcgaaaacatccaaacatgtcacaatcaattctactcctttagaatcaatttaggctcatctaaaagtggaaccaaa 41058825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 22683870 - 22683940
Alignment:
Q  174 taacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 244  Q
    ||||||||| ||| ||| |||||||||||| || |||||||||||| | | | ||||| ||||||||||||    
T  22683870 taacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaactc 22683940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 2326928 - 2326997
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||| |||||||| || || |||||||| |||| |||| || ||| ||||| |||||||    
T  2326928 caaccaaacatgtcataatcaattctatacctccataattaattatggtcccactaaaagtgaaaccaaa 2326997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 9134599 - 9134518
Alignment:
Q  47 aaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatcca-taatcaattttggttcctctagaag 127  Q
    ||||||||||| |||  | |||||| |||||||||| |||||| ||||||| ||||  ||| ||||||||| ||||||||||    
T  9134599 aaaatcaattccactcgataacaactaaacatgtcaaaatcaaatatacacctccagaaattaattttggtccctctagaag 9134518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 16551925 - 16551856
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||| ||||||||||||||||| ||||| || | ||||||||||| |  ||||  |||||||||||||    
T  16551925 caaccatacatgtcagaatcaattctacacctctaaaatcaattttgatctctctgaaagtggaaccaaa 16551856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 22250220 - 22250171
Alignment:
Q  42 gatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaatt 91  Q
    |||||||||||||||||| |  | ||||||||||||||||||||| ||||    
T  22250220 gatgcaaaatcaattctaattgagaacaaccaaacatgtcagaatgaatt 22250171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 25318807 - 25318743
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    |||||||||||||||| ||||||| |  ||||||||| |||||||||||||| || | ||||||||    
T  25318807 caaaatcaattctactcaaaaacatcttaacatgtca-aatcaattatacacctctagaatcaatt 25318743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 39211089 - 39211118
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacac 97  Q
    ||||||||||||||||||||||||||||||    
T  39211089 caaccaaacatgtcagaatcaattatacac 39211118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 52341929 - 52341892
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaat 86  Q
    ||||||||||||| || |||||||||||||||||||||    
T  52341929 aatcaattctactcaacaacaaccaaacatgtcagaat 52341892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 29904013 - 29904065
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    |||||||||||||||| |||   |||||| |||||||||||||| ||||||||    
T  29904013 ttgattctaacttgaagctatattttgtaacttttgactccaaaagtgatttt 29904065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 28083983 - 28084074
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||| |||||  ||| | |||||||||| |||||||||||||||| ||||    
T  28083983 caaaatcaattctactcgaaaacaaccaaatatgtcagaatcaattctacactaccagagtcaattttggctcctctagaagtggaatcaaa 28084074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 47892484 - 47892552
Alignment:
Q  47 aaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 115  Q
    ||||||||||||||| |||| |||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  47892484 aaaatcaattctactcaaaagcaaccaaacatgacggaatcaattctacacttccataatcaattttgg 47892552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 646171 - 646127
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaa 89  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  646171 gcaaaatcaattctactcaaaaacaaccaaacatgtcataatcaa 646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 48832907 - 48833001
Alignment:
Q  185 taggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatcaaaacacaaaccactt 280  Q
    |||||||||||||||||||||||||| |||||||| | ||| ||||| ||| || ||||||  | |||||||||| ||||  |||| |||||||||    
T  48832907 taggatttgtagcttttgactccaaatgtgatttttacactcaaatttattattgaactcacgt-ttatgtgaatatatccgaacataaaccactt 48833001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 36780232 - 36780294
Alignment:
Q  66 aacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagt 128  Q
    ||||||||||||| ||| |||||||| ||||| ||||||||||||| |||| |||||| ||||    
T  36780232 aacaaccaaacatatcaaaatcaattctacacctccataatcaattatggtccctctaaaagt 36780294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 32088664 - 32088578
Alignment:
Q  162 caaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttct 250  Q
    |||| |||||||||||||||| |||||||||  ||||||||| |  ||| |||||||| | ||| ||||| ||||||||||||| ||||    
T  32088664 caaaattgattctaacttgaagctaggatttcgagcttttgatt--aaaagtgatttttacactgaaatttattgttcaactcacttct 32088578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 45660866 - 45660930
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    |||||||||||||||||||||||| | ||| |||| ||||||||||||  |||| |||||||||||    
T  45660866 caaccaaacatgtcagaatcaattcttcacctcca-aatcaattttggcccctccagaagtggaac 45660930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 30557483 - 30557415
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||||||||||| ||||| |||| |||||||| | || | | ||||||||| ||||||    
T  30557483 aaccaaacatgtcagaatcaattctacacctccagaatcaattctagtccttgtagaagtgggaccaaa 30557415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 5407803 - 5407854
Alignment:
Q  170 attctaacttgaaactaggatttgtagcttttgactccaaacgtgattttca 221  Q
    ||||||||||||| ||||||||||||||||  ||||| |||| |||||||||    
T  5407803 attctaacttgaagctaggatttgtagcttcggactcaaaacatgattttca 5407854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 47321983 - 47322066
Alignment:
Q  28 tataatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    ||||||||| ||| || ||| |||||||||||||  | |||||| |||||||||| |||||||| ||||| |||| ||| ||||    
T  47321983 tataatcaattatagaagcagaatcaattctactcgacaacaacaaaacatgtcaaaatcaattctacacctccacaataaatt 47322066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 10324766 - 10324808
Alignment:
Q  169 gattctaacttgaaactaggatttgtagcttttgactccaaac 211  Q
    |||||||||||||| ||||| |||| |||||||||||||||||    
T  10324766 gattctaacttgaagctaggctttgcagcttttgactccaaac 10324808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 39289354 - 39289272
Alignment:
Q  162 caaatttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 244  Q
    |||| |||||||||||||||| |||| | || |||||||||| || |||||||||||| | ||| ||| | || |||||||||    
T  39289354 caaaattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttcaactc 39289272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 50845180 - 50845238
Alignment:
Q  190 tttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 248  Q
    ||||||| ||||| ||||||| || ||||| ||||| ||||| ||||||||||||||||    
T  50845180 tttgtagtttttgcctccaaatgtaatttttatacttaaatttattgttcaactcattt 50845238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 2099728 - 2099659
Alignment:
Q  213 tgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatcaaaacacaaaccactttt 282  Q
    ||||||||| ||  ||||| || | ||||||||||| |||| |||||||||| ||||||||| |||||||    
T  2099728 tgattttcacacataaatttatagctcaactcattttttatatgaatgtatccaaacacaaatcactttt 2099659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 15478118 - 15478187
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||| |||||||| |||||  | | |||||| ||||| ||||| | |||||||||||||    
T  15478118 caaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaa 15478187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 30234608 - 30234661
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctct 122  Q
    ||||| |||||||| |||||||||||||| |  | |||||||||||||||||||    
T  30234608 aaccatacatgtcataatcaattatacacttatagaatcaattttggttcctct 30234661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 31362281 - 31362386
Alignment:
Q  31 aatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtgg 130  Q
    |||||| ||| || ||||||||||||||||   ||| ||||||||||||| ||| || ||| |||||||| | |||||| ||||   | ||||||||| |    
T  31362281 aatcaattatggaggcaaaatcaattctacatgaaagcaaccaaacatgttagagtcgattctacacatctagaatcaagtttgacccttctagaagtag 31362380  T
Q  131 aaccaa 136  Q
    ||||||    
T  31362381 aaccaa 31362386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 35592496 - 35592572
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactc 244  Q
    ||||||||||||| || ||||||||| ||||||||||||| |||| | ||||| | ||| ||||| ||| ||||||||    
T  35592496 ttgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttattcttcaactc 35592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 8381951 - 8381883
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||| |||||||| || || || | |||||||||||  ||||| |||||| ||||||||    
T  8381951 aaccaaacatgtcaaaatcaattttatacctctagaatcaattttgactcctccagaagtcgaaccaaa 8381883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 24587899 - 24587835
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaat 110  Q
    |||| ||||||||||| || | ||||||||||||||| |||||||| ||||| || | |||||||    
T  24587899 caaagtcaattctactcaagagcaaccaaacatgtcacaatcaattctacacctctagaatcaat 24587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 35681897 - 35681829
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||||||||||  |||||||| | |||||| ||||   |||||| ||||| |||||||    
T  35681897 aaccaaacatgtcagaatcaatgttacacatctaaaatcaactttgacccctctaaaagtgaaaccaaa 35681829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 31834 - 31725
Alignment:
Q  28 tataatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaag 127  Q
    ||||||||| | | || ||| |||||||| ||||  | |||||||||||||||||||||||||| ||||| || | |||||||||||||  |||||||||    
T  31834 tataatcaattttggaggcagaatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttggtcactctagaag 31735  T
Q  128 tggaaccaaa 137  Q
    ||||||||||    
T  31734 tggaaccaaa 31725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 37561706 - 37561801
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatc 264  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| |||||||| | ||| ||||  |||||||||||  ||| |||||||||||||||    
T  37561706 ttgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaatctattgttcaact--tttgttatgtgaatgtatc 37561801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 15928532 - 15928595
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattt 112  Q
    ||||||||||||| || ||||||||||||||||| |||||||| ||||| |||| |||||||||    
T  15928532 aatcaattctactcaacaacaaccaaacatgtcaaaatcaattctacacctccagaatcaattt 15928595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 32827519 - 32827594
Alignment:
Q  174 taacttgaaactaggatttgta-gcttttgactccaaacgtgattttcatactaaaattcattgttcaactcattt 248  Q
    ||||||||| ||||||||| || |||||||| ||||||||||||||||||| | ||||  ||||||||||||||||    
T  32827519 taacttgaagctaggatttttaagcttttgattccaaacgtgattttcataatcaaatatattgttcaactcattt 32827594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 33047673 - 33047738
Alignment:
Q  72 caaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||||| |||||||||| | |||||||    
T  33047673 caaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaa 33047738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 44810374 - 44810426
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| |||||||    
T  44810374 ttgattctaacttgaagctaggatttgtagcttttgacggcaaacatgatttt 44810426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 3654980 - 3654930
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 217  Q
    ||||||||||||| || |||||||||||| ||||||||||||||| |||||    
T  3654980 ttgattctaacttcaagctaggatttgtaccttttgactccaaacatgatt 3654930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 7630407 - 7630359
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattat 93  Q
    |||||||||||||||||  ||| ||||||||||||||| ||||||||||    
T  7630407 gcaaaatcaattctacttgaaagcaaccaaacatgtcaaaatcaattat 7630359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 8481389 - 8481437
Alignment:
Q  66 aacaaccaaacatgtcagaatcaattatacacatccataatcaattttg 114  Q
    |||||| |||||||||| |||| |||||||||||||| |||||||||||    
T  8481389 aacaacaaaacatgtcaaaatccattatacacatccagaatcaattttg 8481437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 31453388 - 31453309
Alignment:
Q  31 aatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    |||||| ||| || ||||||| ||||||||| || | |||||||||||| |||||| || ||||||||| |||||||||||    
T  31453388 aatcaattatagaggcaaaataaattctactcaacatcaaccaaacatgacagaattaa-tatacacattcataatcaatt 31453309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 32595966 - 32595894
Alignment:
Q  66 aacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 138  Q
    ||||||||||||||||||||   ||| |||||  |||||||||||| |||| ||||||||| || ||||||||    
T  32595966 aacaaccaaacatgtcagaaatgattttacaccaccataatcaattatggtccctctagaattgaaaccaaat 32595894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 29823508 - 29823559
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattt 218  Q
    ||||||| |||||||| ||| ||||||||||||||||| ||||| |||||||    
T  29823508 ttgattcaaacttgaatctaagatttgtagcttttgaccccaaatgtgattt 29823559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 30503200 - 30503109
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaa 136  Q
    ||||||||| |||| ||  ||| ||| | ||||||| |||||||||| ||||| |||| |||||||||||   ||| |||||||||||||||    
T  30503200 gcaaaatcatttcttcttgaaatcaatcgaacatgttagaatcaattctacacttccaaaatcaattttgacccctttagaagtggaaccaa 30503109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 308
Target Start/End: Complemental strand, 33502934 - 33502791
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttct-tatgt-gaatgtatc 264  Q
    |||||||||||||||| |||| ||||  || |||||| || | | |||||| | | ||||||||| |||||||||||||||| |  || |  |||||||     
T  33502934 ttgattctaacttgaagctagaatttcaagtttttgagtctagatgtgattattacactaaaatttattgttcaactcatttttacatataaaatgtata 33502835  T
Q  265 aaaacacaaaccacttttgactaaaatcaactttacaaaatcaa 308  Q
     ||||| ||||||||||| | | ||||||| |||||||||||||    
T  33502834 caaacataaaccacttttaagtgaaatcaattttacaaaatcaa 33502791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 43501130 - 43501083
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattataca 96  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||    
T  43501130 aatcaattctacttgaaagcaaccaaacatgtcagaatcaattctaca 43501083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 11759932 - 11760006
Alignment:
Q  63 aaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||| || |||||||||||||||||||| ||||| |||  ||||||||||| |  |||||||| ||||| ||||    
T  11759932 aaaaaaaatcaaacatgtcagaatcaattctacacttccggaatcaattttgatctctctagaaatggaatcaaa 11760006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 37402319 - 37402269
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 217  Q
    |||| ||||||||||| |||| ||||||||||||||||| ||||| |||||    
T  37402319 ttgactctaacttgaagctagaatttgtagcttttgacttcaaacatgatt 37402269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 44439253 - 44439331
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||||||| |||  ||||| ||||||||| || |||  ||||||| | ||| ||||| |||||||||||||    
T  44439253 ttgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactca 44439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 9943391 - 9943322
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||| | |||||||| ||||| | || |||||||||||||| ||| | | |||||||||||    
T  9943391 caaccaaacatgttaaaatcaattttacaccttcagaatcaattttggttgctccaaatgtggaaccaaa 9943322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 28028848 - 28028893
Alignment:
Q  174 taacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    ||||||||| |||| ||||||||||||||||| |||| ||||||||    
T  28028848 taacttgaagctagaatttgtagcttttgactacaaatgtgatttt 28028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 7629829 - 7629761
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||| || |||||||| ||||| || | ||||||| |||| ||||| | |||||||||||||    
T  7629829 aaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaa 7629761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 43073975 - 43074011
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttga 203  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43073975 ttgattttaacttgaaactaagatttgtagcttttga 43074011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 43501125 - 43501160
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttga 203  Q
    ||||||||| |||||||||||||||||||||||||||    
T  43501125 ttgattcta-cttgaaactaggatttgtagcttttga 43501160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 43717329 - 43717265
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    ||||||||||||| |  || | |||||||||||| |||||||| |||||||| | ||||||||||    
T  43717329 aatcaattctactaatcaatatccaaacatgtcaaaatcaattctacacatctagaatcaatttt 43717265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 17393 - 17325
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||| |||||| |||||||| ||||| |||| |||||||||||||| |||||||||||||||||||    
T  17393 aaccaaatatgtcataatcaattctacacctccagaatcaattttggttactctagaagtggaaccaaa 17325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 32927897 - 32927837
Alignment:
Q  31 aatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaatt 91  Q
    ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  32927897 aatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgtcagagtcaatt 32927837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 44141186 - 44141243
Alignment:
Q  80 tcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||||||||||    
T  44141186 tcagaatcaattctagacctccagaatcaattttggttcctctagaagtggaaccaaa 44141243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 15677896 - 15677984
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||| |  ||| |||||||||||||||||||||||| ||||  |||| ||||||||||    ||| ||||||||||||||||    
T  15677896 aatcaattctatttgaaagcaaccaaacatgtcagaatcaattgtacaactccacaatcaattttaacccctgtagaagtggaaccaaa 15677984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 32101060 - 32100972
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||| | || |  ||||||||||||||||||||||| ||||||| || |||||| | | || |||||| |||||||||||||    
T  32101060 aatcaattctagttaacattaaccaaacatgtcagaatcaattctacacattcagaatcaactctagtccctctaaaagtggaaccaaa 32100972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 39648424 - 39648381
Alignment:
Q  168 tgattctaacttgaaactaggatttgtagcttttgactccaaac 211  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
T  39648424 tgattctaactttaagctaggatttgtagcttttgactccaaac 39648381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 13384769 - 13384819
Alignment:
Q  66 aacaaccaaacatgtcagaatcaattatacacatccataatcaattttggt 116  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||| ||||    
T  13384769 aacaaccaaacatgtcagaatcaattctacacctccaaaatcaattatggt 13384819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 42455917 - 42455835
Alignment:
Q  31 aatcaactattgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    |||||| ||| || ||| ||||||| ||||| |||| ||||||||||||||| |||||||| |||   |||||||||||||||    
T  42455917 aatcaattatggaggcagaatcaatcctactcaaaagcaaccaaacatgtcaaaatcaattctactgctccataatcaatttt 42455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 11791818 - 11791746
Alignment:
Q  168 tgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttca 240  Q
    |||||||| ||| || |||||||||||||||||||| ||  ||||||||||| | ||||||||| | ||||||    
T  11791818 tgattctaccttcaagctaggatttgtagcttttgagtctcaacgtgatttttacactaaaatttactgttca 11791746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 39648263 - 39648331
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||| |||||||||||||  || | |||||||||||  ||||||| ||||| |||||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaa 39648331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 29912050 - 29911983
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    ||||||||||| |  |||||||||||||||||||| | |||||||||||||  |  ||||||||||||    
T  29912050 caaaatcaattatcttgaaaaacaaccaaacatgttaaaatcaattatacatgtatataatcaatttt 29911983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 33184126 - 33184063
Alignment:
Q  48 aaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    ||||||||||||||  |||||| ||||| |||| ||||| ||||||| || |||||||||||||    
T  33184126 aaatcaattctactcgaaaacagccaaatatgtaagaattaattatagacctccataatcaatt 33184063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 37684395 - 37684308
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    ||||||||||||||||  | ||||||||||||| || ||||||||| ||||| |||| ||| || | || | ||| ||||||||||||    
T  37684395 caaaatcaattctactccacaacaaccaaacatttcggaatcaattttacacctccaaaataaactatgatccctttagaagtggaac 37684308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 32994322 - 32994384
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    ||||||||||||   ||| ||||||||||| ||| |||||||| |||||||||| ||||||||    
T  32994322 aatcaattctacacgaaagcaaccaaacatatcataatcaattctacacatccagaatcaatt 32994384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 5997377 - 5997422
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaat 90  Q
    |||||||||||| |||| ||||||| |||||||||||| |||||||    
T  5997377 gcaaaatcaattttactcaaaaacatccaaacatgtcaaaatcaat 5997422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 1836298 - 1836262
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttga 203  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  1836298 ttgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 35525399 - 35525335
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    |||||||||||||  | ||||| ||||||||||||||| || | ||||||| || ||||||||||    
T  35525399 aatcaattctactcgacaacaatcaaacatgtcagaattaaatctacacattcagaatcaatttt 35525335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 41614835 - 41614743
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||||||  ||| || ||||||| |||| |||||||| || || || | |||||||||||| ||||  | || ||||||||||    
T  41614835 gcaaaatcaattctacttgaaaccatccaaacaagtcaaaatcaattttatacctctagaatcaattttggctcctacacaaatggaaccaaa 41614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 50321853 - 50321922
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 115  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||| |||| ||||  ||||||||||||    
T  50321853 caaaattaattctactaaaaaacaaccaaacatgtcagaattaattctacatatccgaaatcaattttgg 50321922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 12675010 - 12674934
Alignment:
Q  39 attgatgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 115  Q
    ||||| |||||||||| ||||||  ||||||||||||||||| || ||||||| ||||| |||| ||||||||||||    
T  12675010 attgaagcaaaatcaactctacttgaaaacaaccaaacatgttaggatcaattctacacctccagaatcaattttgg 12674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 1290749 - 1290680
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||  ||| |||||||| ||||| || | |||||||||| |||||||||||||||||||||||    
T  1290749 caaccaaacaaatcaaaatcaattctacacctctagaatcaattttagttcctctagaagtggaaccaaa 1290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 52364017 - 52363964
Alignment:
Q  84 aatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||| || ||||||||||||||| |||||| |||||||||||||    
T  52364017 aatcaattatacacctctataatcaattttggtccctctaaaagtggaaccaaa 52363964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 3845210 - 3845298
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||  | | ||| ||||||||||| |||||||| ||||| || | |||||||||||||| ||| | |||||||||||||    
T  3845210 aatcaattctacttgagatcaaacaaacatgtcaaaatcaattctacacctctagaatcaattttggttactccaaaagtggaaccaaa 3845298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 21513432 - 21513380
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    |||||| ||||||  | ||||||||||||||||||||||||||||||||||||    
T  21513432 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttt 21513380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 1441476 - 1441567
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||||||| ||||  |||||||||||||| | |||||| ||||| || | ||  |||||||||| ||| | |||||||||||||    
T  1441476 caaaatcaattctactcaaaagaaaccaaacatgtcaaactcaattctacacctctagaaataattttggttactccaaaagtggaaccaaa 1441567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 54596805 - 54596738
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggt 116  Q
    |||||||||||||  ||||||||||||||||||| |||||||| ||||| || | ||| |||||||||    
T  54596805 aatcaattctacttgaaaacaaccaaacatgtcataatcaattttacacctctaaaattaattttggt 54596738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 23290292 - 23290342
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 217  Q
    |||||||||||||||||||| ||||||||||||||| | |||||| |||||    
T  23290292 ttgattctaacttgaaactatgatttgtagcttttgcccccaaacatgatt 23290342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 49634125 - 49634075
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatt 217  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  49634125 ttgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgatt 49634075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 52141361 - 52141431
Alignment:
Q  67 acaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||| |||||| |||||||| ||| ||||| || | |||||||| |||| ||||||||||||||||||||    
T  52141361 acaactaaacatatcagaatctattctacacctcaaaaatcaattatggtccctctagaagtggaaccaaa 52141431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 52925728 - 52925794
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaacc 134  Q
    ||||||||||||||| |||||||||||||| || | |||||||||||  ||||| | ||||||||||    
T  52925728 caaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaacc 52925794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 3776506 - 3776437
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 138  Q
    |||||||||||||| |||||||| ||||| || |||| ||||||||  ||||| | ||||||||||||||    
T  3776506 aaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaagtggaaccaaat 3776437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 7298400 - 7298328
Alignment:
Q  169 gattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaac 242  Q
    |||||||||||||| ||||||||||||| |||||| || || ||||||||| | ||| ||||| ||||||||||    
T  7298400 gattctaacttgaagctaggatttgtagtttttgagtctaatcgtgattttta-actgaaatttattgttcaac 7298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 138
Target Start/End: Complemental strand, 8801940 - 8801848
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 138  Q
    ||||||||| |||||| || | ||||||||||||| | |||||||||||||| || | |||||||| |  |   |||||||||||||||||||    
T  8801940 caaaatcaaatctactcaacaccaaccaaacatgtgaaaatcaattatacacctcaaaaatcaattctaatcaatctagaagtggaaccaaat 8801848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 38332656 - 38332698
Alignment:
Q  70 accaaacatgtcagaatcaattatacacatccataatcaattt 112  Q
    ||||||||||||| ||||||||||||||||| | |||||||||    
T  38332656 accaaacatgtcaaaatcaattatacacatctagaatcaattt 38332698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 46943381 - 46943474
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaa-gtggaaccaaa 137  Q
    |||||||||||  |||| ||||||||| ||| |||| ||| |||||| ||||  | |||||||||||||||   |||||||| |||||||||||    
T  46943381 gcaaaatcaatcatacttaaaaacaacaaaaaatgttagagtcaattttacatcttcataatcaattttgggctctctagaatgtggaaccaaa 46943474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 830149 - 830189
Alignment:
Q  48 aaatcaattctactgaaaaacaaccaaacatgtcagaatca 88  Q
    ||||||||||| ||| ||||||||||||||||||| |||||    
T  830149 aaatcaattctcctggaaaacaaccaaacatgtcaaaatca 830189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 46943161 - 46943094
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttg 114  Q
    |||||| |||| ||||  ||| ||||||||||||||| |||||||| |||| ||| |||||||||||||    
T  46943161 caaaattaattatactcgaaatcaaccaaacatgtcaaaatcaattgtaca-atctataatcaattttg 46943094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 22226331 - 22226422
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||| || |  | |||||||||||||||||||||||||| ||||| |||| |||||||| | |||| |||| |||||||| ||||    
T  22226331 caaaatcaattttagtcgacaacaaccaaacatgtcagaatcaattctacacgtccaaaatcaattatagttcgtctaaaagtggaatcaaa 22226422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 11648075 - 11647981
Alignment:
Q  43 atgcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||| ||| |||||||||  | | ||| ||||||||||| ||||||||||||||  ||| |||||||| |||| |||||||||||||| |||||    
T  11648075 atgcataataaattctactcgacagcaatcaaacatgtcaaaatcaattatacaccaccaaaatcaattatggtccctctagaagtggagccaaa 11647981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 25548505 - 25548439
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttgg 115  Q
    |||||||| |||| |||| ||| ||||||||||| |||||||| |||||||||| ||||||||||||    
T  25548505 aatcaattttacttaaaagcaatcaaacatgtcataatcaattctacacatccacaatcaattttgg 25548439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 42439703 - 42439625
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||||||| |||| || |||||||||||| || |||||||||||| | |||||| || || ||||||||||    
T  42439703 ttgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaactca 42439625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 18851199 - 18851268
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||| |||||| |||||| ||||  |||||||||||||||||| |||||||||| |||| ||||    
T  18851199 caaccaaacacgtcagagtcaattctacaactccataatcaattttggtccctctagaagcggaatcaaa 18851268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 12433037 - 12432961
Alignment:
Q  169 gattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||||| |||||||||||| || ||||||| |||||||||||  | ||  ||||| |||||||||||||    
T  12433037 gattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttattgttcaactca 12432961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 39097251 - 39097163
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||   ||| ||||||||||||||| |||||||| ||||| || ||||||||||| |||  ||||| ||||| |||||||    
T  39097251 aatcaattctacctgaaaccaaccaaacatgtcaaaatcaattctacacctctataatcaatttcggtctctctaaaagtgaaaccaaa 39097163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 280
Target Start/End: Original strand, 35439113 - 35439227
Alignment:
Q  165 atttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactcatttcttatgtgaatgtatc 264  Q
    |||| ||||||| ||||| |||| |||||||  ||||||||||||| || || || ||||| | ||| |||||||||||||||| ||| || ||||||||    
T  35439113 atttcattctaaattgaagctagaatttgtactttttgactccaaatgtaatcttaatactcacatttattgttcaactcattt-ttacgttaatgtatc 35439211  T
Q  265 aaaacacaaaccactt 280  Q
     ||||| |||| ||||    
T  35439212 caaacataaacaactt 35439227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 6949671 - 6949581
Alignment:
Q  47 aaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||||| |||||||||||||  ||||||||| |||| |||   |||| ||||||||||| | | | || |||||||||||||    
T  6949671 aaaatcaattctactcaaaaacaaccaaagttgtcagaattaattctactactccaaaatcaattttgatccttataaaagtggaaccaaa 6949581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 38845644 - 38845697
Alignment:
Q  84 aatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||| ||||| |||| |||||||||||||  |||||||||||||||||||    
T  38845644 aatcaattctacacctccagaatcaattttggtctctctagaagtggaaccaaa 38845697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 370808 - 370896
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||||||||||| |||||||||||||||| ||| |||||||| ||||  || | |||| ||||||  |||| || || ||||||||||    
T  370808 aatcaattctacttaaaaacaaccaaacatatcataatcaattttacatctcgagaatctattttgactcctttaaaaatggaaccaaa 370896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 3970486 - 3970434
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    ||||||||||  |||| |||||| ||||||||||||||||||||| |||||||    
T  3970486 ttgattctaatctgaagctaggaattgtagcttttgactccaaacttgatttt 3970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 12404997 - 12405041
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaatttt 113  Q
    |||||||||||||| |||||||||||||| | |||||||||||||    
T  12404997 aaccaaacatgtcaaaatcaattatacaccttcataatcaatttt 12405041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 15368210 - 15368142
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    ||||| |||||||| |||||||| |||| ||| | |||||||||||| ||||| | |||||||||||||    
T  15368210 aaccatacatgtcaaaatcaattctacatatctagaatcaattttggctcctccaaaagtggaaccaaa 15368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 3043121 - 3043188
Alignment:
Q  68 caaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaacca 135  Q
    |||| |||||||||| |||||||| ||||| || | ||||||||||| |||||| | |||||||||||    
T  3043121 caactaaacatgtcaaaatcaattctacacctctagaatcaattttgattcctccataagtggaacca 3043188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 27374385 - 27374452
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattt 112  Q
    ||||||| |||||||||  |||||||||||||||||||||| ||||| |   |||||| |||||||||    
T  27374385 gcaaaattaattctacttgaaaacaaccaaacatgtcagaaacaattcttagcatccagaatcaattt 27374452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 34195211 - 34195262
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattt 218  Q
    |||||| |||||| || |||||||||||| ||||| ||||||||||||||||    
T  34195211 ttgattttaactttaagctaggatttgtatcttttaactccaaacgtgattt 34195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 1102133 - 1102171
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgact 205  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  1102133 ttgattttaacttgaagctaggatttgtagcttttgact 1102171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 29922884 - 29922798
Alignment:
Q  46 caaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaa 132  Q
    ||||||||||||| ||  | ||||||||||||||||| |||||||| |||||  | | |||||||||||  ||||| | ||||||||    
T  29922884 caaaatcaattctgctcgagaacaaccaaacatgtcaaaatcaattctacactactagaatcaattttgactcctcaaaaagtggaa 29922798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 29923241 - 29923319
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||||||| ||| ||||||| | |||| |||| |||||||||||| | ||| ||||| | |||| ||||||    
T  29923241 ttgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaatttaatgtttaactca 29923319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 35108203 - 35108161
Alignment:
Q  72 caaacatgtcagaatcaattatacacatccataatcaattttg 114  Q
    |||| ||||||||||||||||||||| |||| |||||||||||    
T  35108203 caaatatgtcagaatcaattatacacttccaaaatcaattttg 35108161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 42194617 - 42194543
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaa 241  Q
    ||||||||||| |||| ||||| |||||||||||||| || ||| ||| |||| | ||| ||||| |||||||||    
T  42194617 ttgattctaacctgaagctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttattgttcaa 42194543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 1105430 - 1105378
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacac 97  Q
    |||||||||||||||||  | |||| ||||| |||||| ||||||||||||||    
T  1105430 gcaaaatcaattctacttgagaacagccaaaaatgtcaaaatcaattatacac 1105378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 11599632 - 11599684
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgatttt 219  Q
    ||||||||||||||||| ||| | ||||| ||||| ||||||||| |||||||    
T  11599632 ttgattctaacttgaaattagaacttgtaacttttaactccaaacatgatttt 11599684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 15955447 - 15955483
Alignment:
Q  55 ttctactgaaaaacaaccaaacatgtcagaatcaatt 91  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  15955447 ttctactaaaaagcaaccaaacatgtcagaatcaatt 15955483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 17862505 - 17862569
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaatt 231  Q
    |||||| ||||||||| |||  || |||||||||||| | ||||||||||||||| ||| |||||    
T  17862505 ttgattttaacttgaagctataatatgtagcttttgaattcaaacgtgattttcacactcaaatt 17862569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 18349774 - 18349852
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||| ||| |||||  |||| |||||||||||||||| ||||||||||||| | ||| ||||| |||||||||||||    
T  18349774 ttgattttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttattgttcaactca 18349852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 12306968 - 12306902
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    ||||||||||||||||| || | ||||||||||||||| |||||||| | ||| |||| ||||||||    
T  12306968 gcaaaatcaattctactcaagagcaaccaaacatgtcaaaatcaattttgcacctccaaaatcaatt 12306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 45997476 - 45997431
Alignment:
Q  66 aacaaccaaacatgtcagaatcaattatacacatccataatcaatt 111  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||    
T  45997476 aacaatcaaacatgtaagaatcaattatgcacatccataatcaatt 45997431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 36271373 - 36271329
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaac 211  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||    
T  36271373 ttgattctaatttgaaactaggatttctagcttttgactacaaac 36271329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 5267774 - 5267907
Alignment:
Q  47 aaaatcaattctactgaaaa-acaaccaaacatgtc-agaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaa---atttt 141  Q
    ||||||||||||||| |||| ||||||||||||||| | |||||||||||||| || | |||||| || ||  |||| | |||||||| |||   |  ||    
T  5267774 aaaatcaattctactaaaaaaacaaccaaacatgtcaaaaatcaattatacacctctagaatcaagttcggcacctccaaaagtggaatcaatgtaagtt 5267873  T
Q  142 ggtttcaagtttggaggaggcaaatttgattcta 175  Q
    |||||||||||||| ||||| ||| || ||||||    
T  5267874 ggtttcaagtttggtggaggaaaaattaattcta 5267907  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 17111862 - 17111820
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaatt 91  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcagaatcaatt 17111820  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 42675136 - 42675058
Alignment:
Q  167 ttgattctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    |||||||||||||| |||||||||| |||| |||||| ||||||| | ||||| | | || |||| || ||||||||||    
T  42675136 ttgattctaacttggaactaggattggtagattttgattccaaacataatttttacattagaatttatcgttcaactca 42675058  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 46325636 - 46325574
Alignment:
Q  75 acatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||| ||| |||||||| |||||||||| ||| || ||||||| ||||||||||| |||||||    
T  46325636 acatatcaaaatcaattctacacatccaaaattaaatttggtttctctagaagtgaaaccaaa 46325574  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 45004952 - 45004883
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaat 138  Q
    |||||||||||||| |||||||| ||||| || | ||||||||||||  | | |||||||| ||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttggcccttttagaagtgaaaccaaat 45004883  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 48159016 - 48159073
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacacatccataat 106  Q
    |||||||||||||| ||| ||||||||||| | ||||||||||| | || ||||||||    
T  48159016 aatcaattctactggaaagcaaccaaacatctgagaatcaattacaaacctccataat 48159073  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 12306725 - 12306673
Alignment:
Q  45 gcaaaatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacac 97  Q
    |||||||||||||||||  | | ||||||||||||||| |||||||| |||||    
T  12306725 gcaaaatcaattctacttgagagcaaccaaacatgtcaaaatcaattctacac 12306673  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 31486777 - 31486825
Alignment:
Q  49 aatcaattctactgaaaaacaaccaaacatgtcagaatcaattatacac 97  Q
    ||||||||||||| ||||||||| ||| |||| ||||| ||||||||||    
T  31486777 aatcaattctactaaaaaacaactaaatatgtgagaataaattatacac 31486825  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 38123766 - 38123834
Alignment:
Q  69 aaccaaacatgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaaccaaa 137  Q
    |||||||||||| | |||||||| ||||  || | |||||||||||| ||||| | |||||||||||||    
T  38123766 aaccaaacatgttaaaatcaattctacatctctagaatcaattttggctcctccaaaagtggaaccaaa 38123834  T

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Target: scaffold0197 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 31542 - 31597
Alignment:
Q  78 tgtcagaatcaattatacacatccataatcaattttggttcctctagaagtggaac 133  Q
    |||||||||||||| ||||  || | ||||||||||||| ||||||||||||||||    
T  31542 tgtcagaatcaattttacaggtctaaaatcaattttggtccctctagaagtggaac 31597  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 23675 - 23601
Alignment:
Q  170 attctaacttgaaactaggatttgtagcttttgactccaaacgtgattttcatactaaaattcattgttcaactca 245  Q
    ||||||||| ||| |||||||||||||||||||| || | |||||||||| | ||||||||| ||  |||||||||    
T  23675 attctaact-gaagctaggatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactca 23601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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