View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6345_low_3 (Length: 412)
Name: NF6345_low_3
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6345_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 17885045 - 17884647
Alignment:
| Q |
11 |
cacagacacaagcggaataatggggtctagaaatcacaaaattagttagtctttaactttatatgacattctcaaataggtgttgccattgttaatattt |
110 |
Q |
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| T |
17885045 |
cacacacacaagcggaataatcggggctagaaatcacaaaattagttagtctttaactttatatgacattctcaaataggtgttgccattgttaatattt |
17884946 |
T |
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| Q |
111 |
caaaaaggcctctctgagcagttggtctctatatttaacacttattataaattagtttcatatattttgacaacttgttaatgatttggtgcttgtattt |
210 |
Q |
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| T |
17884945 |
caaaaaggtctctctgagcagttggtctctatatttaacacttattataaattagtttcatatattttgacaacttgttaacgatttggtgcttgtattt |
17884846 |
T |
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| Q |
211 |
aacctcgcactatcaacttagtccatgatac--------acggactaatatgaatacaatttgacagagtcagtggcgtttttgaaatatgtatgtgcca |
302 |
Q |
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| T |
17884845 |
aacctcgcactatcaacttagtccatgacacgatgtcatacgaactaatatgaatacaatttgacagagtcagtggcgtttttgaaatatgtatgtgcca |
17884746 |
T |
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| Q |
303 |
gggacctatttgaaagcgtcctat---ttcggagactaatttggtagttaactcattaattttatatgtcataaacatttatttgcttttaatatagat |
398 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17884745 |
gggacctatttgaaagcgtcctataaattcggagactaatttggtagttaactcattaattttatatgtcataaatatttatttgcttttaatatagat |
17884647 |
T |
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