View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6345_low_7 (Length: 267)
Name: NF6345_low_7
Description: NF6345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6345_low_7 |
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| [»] scaffold0342 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 35 - 252
Target Start/End: Original strand, 41369163 - 41369380
Alignment:
| Q |
35 |
aactatggagcttgacaacctttattctaatattacattcatttccacctttctctttatctttttgctactcaaaatagtcaagagatggaggtgtaac |
134 |
Q |
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| T |
41369163 |
aactatggagcttgacaacctttattctaatattacattcatttcctcctttctcttcatctttttgctactcaaaatagtcaagagatggaggtgtaac |
41369262 |
T |
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| Q |
135 |
tattccaccatcaatttaccaccagggccatggacactgctcctcacaggaaatatacattaaattattagtagctcactgccccatcattgcttcaaaa |
234 |
Q |
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| T |
41369263 |
tattccaccatcaatttaccaccagggccatggacactgcccctcacaggaaatatacatcaaattattagtagctcactgccccatcattgcttcaaaa |
41369362 |
T |
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| Q |
235 |
atttggcaaagaaatatg |
252 |
Q |
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|||||||||||||||||| |
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| T |
41369363 |
atttggcaaagaaatatg |
41369380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 41285767 - 41285882
Alignment:
| Q |
137 |
ttccaccatcaatttaccaccagggccatggacactgctcctcacaggaaatatacattaaattattagtagctcactgccccatcattgcttcaaaaat |
236 |
Q |
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|||||| |||||||||||||| || ||||||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |
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| T |
41285767 |
ttccactatcaatttaccacctggaccatggacactgcccctcataggaaatatacatcatattattagtagctcactgccccatcattgcttcaaaatt |
41285866 |
T |
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| Q |
237 |
ttggcaaagaaatatg |
252 |
Q |
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| T |
41285867 |
ttggaagagaaatatg |
41285882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 31189247 - 31189091
Alignment:
| Q |
82 |
cctttctctttatctttttgctactcaaaatagtcaagagatggaggtgtaactattccaccatcaatttaccaccagggccatggacactgctcctcac |
181 |
Q |
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| T |
31189247 |
cctttctctttctctttgtgctactcaaaatagttaaaaaatggagttgtaacaattccagtatcaatttaccaccaggaccatggacactacccatcat |
31189148 |
T |
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| Q |
182 |
aggaaatatacattaaattattagtagctcactgccccatcattgcttcaaaaattt |
238 |
Q |
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| T |
31189147 |
aggaaacatgcatcaacttattagcaactcattgcctcatcaatgcttcaaaaattt |
31189091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 241
Target Start/End: Complemental strand, 31179200 - 31179040
Alignment:
| Q |
82 |
cctttctctttatctttttgctactcaaaatagtcaagaga-tggaggtgtaactattccaccatcaatttaccaccagggccatggacactgctcctca |
180 |
Q |
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| T |
31179200 |
cctttctctttctctttgtgctactcaaaatagttaaaaaaatggagttgtaacaattccagtatcaatttaccaccaggaccatggacactacccgtca |
31179101 |
T |
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| Q |
181 |
caggaaatatacattaaattattagtagctcactgccccatcattgcttcaaaaatttggc |
241 |
Q |
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| T |
31179100 |
taggaaacatacatcaagttattagtaactcattacttcatcagtgcttcagaaatttggc |
31179040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 31185727 - 31185571
Alignment:
| Q |
82 |
cctttctctttatctttttgctactcaaaatagtcaagagatggaggtgtaactattccaccatcaatttaccaccagggccatggacactgctcctcac |
181 |
Q |
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| T |
31185727 |
cctttctcattttcttagtgctactaaaaatagttaaaagatggaggtgtaataattctactatcaatttaccacaaggaccacggacactacccatcat |
31185628 |
T |
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| Q |
182 |
aggaaatatacattaaattattagtagctcactgccccatcattgcttcaaaaattt |
238 |
Q |
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| T |
31185627 |
aggaaacatacatcaaattattagaaactcattgcctcatcagtgcttcaaaaattt |
31185571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 31224563 - 31224686
Alignment:
| Q |
82 |
cctttctctttatctttttgctactcaaaatagtcaagagatggaggtgtaactattccaccatcaatttaccaccagggccatggacactgctcctcac |
181 |
Q |
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||||||||||| |||| ||||||||||| |||| || | |||||| |||||| |||||| ||||||||||||||||| ||||||||||| | | ||| |
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| T |
31224563 |
cctttctctttctcttggtgctactcaaattagttaaaaaatggagttgtaacaattccaatatcaatttaccaccaggaccatggacactacccatcat |
31224662 |
T |
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| Q |
182 |
aggaaatatacattaaattattag |
205 |
Q |
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| T |
31224663 |
aggaaacttacatcaaattattag |
31224686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 252
Target Start/End: Original strand, 41321671 - 41321864
Alignment:
| Q |
59 |
ttctaatattacattcatttccacctttctctttatctttttgctactcaaaatagtcaagagatggaggtgtaactattccaccatcaatttaccacca |
158 |
Q |
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| T |
41321671 |
ttctaatattaccttcatttccttcattatcttcctcttggtgttattcaaaatagtcaaaatatggagttataacacttccacggttaatttgccacca |
41321770 |
T |
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| Q |
159 |
gggccatggacactgctcctcacaggaaatatacattaaattattagtagctcactgccccatcattgcttcaaaaatttggcaaagaaatatg |
252 |
Q |
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| T |
41321771 |
ggaccatggaaactacccttcataggaaacttacatcagattatcagcagatcattgccccatcatctcttcaaaattttggcagataaatatg |
41321864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 252
Target Start/End: Original strand, 41327635 - 41327781
Alignment:
| Q |
106 |
tcaaaatagtcaagagatggaggtgtaactattccaccatcaatttaccaccagggccatggacactgctcctcacaggaaatatacattaaattattag |
205 |
Q |
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| T |
41327635 |
tcaaaatagttcaaagatggagttttaacaattcgactaccaaattgccaccaggaccatggaaactacccctcataggaaacttacatcagattatcag |
41327734 |
T |
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| Q |
206 |
tagctcactgccccatcattgcttcaaaaatttggcaaagaaatatg |
252 |
Q |
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| T |
41327735 |
cagatcattgccccatcatctcttcaaaattttggcagataaatatg |
41327781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 41315601 - 41315785
Alignment:
| Q |
39 |
atggagcttgacaacctttattctaatattacattcatttccacctttctctttatctttttgctactcaaaatagtcaagagatggaggtgtaactatt |
138 |
Q |
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| T |
41315601 |
atggagcttcacaaccatttttttaatatcaccttcatttccttctttatcttcctcttggtgttattcaaaatagtcaaaatatggagttataacactt |
41315700 |
T |
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| Q |
139 |
ccaccatcaatttaccaccagggccatggacactgctcctcacaggaaatatacattaaattattagtagctcactgccccatca |
223 |
Q |
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| T |
41315701 |
ccacggttaatttgccaccaggaccatggaaactacccttcataggaaacttacatcagattatcagcagatcattgccccatca |
41315785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0342 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0342
Description:
Target: scaffold0342; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 376 - 410
Alignment:
| Q |
1 |
cataatcatttagttaattcttttctcttgttcta |
35 |
Q |
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| T |
376 |
cataatcatctagttaattcttttctcttgttcta |
410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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