View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6346_low_1 (Length: 399)
Name: NF6346_low_1
Description: NF6346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6346_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 19651042 - 19651356
Alignment:
| Q |
18 |
ataaaattagtgatgattaagcaagcattgattgatgataatagggaaaatgattaaactgagataaaataataaaat------gagtgaagaatgagga |
111 |
Q |
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| T |
19651042 |
ataaaattagtgatgattaagcaagcattgattgatgataatagggaaaatgattaaactgggataaaataataaaattaaaatgagtgaagattgag-- |
19651139 |
T |
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| Q |
112 |
gattgataaccttaaggtgaggcgaacagaagttctgcgaagagcccacatattgtttggtcacagagagagagcgagcgatgatgataaactgtgaatg |
211 |
Q |
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| T |
19651140 |
-attgataaccttaaggtgaggcgaacagaagttctgcgaagagcccacatattggttggtcacagag--agagcgagcaatgatgataaactgtgaatg |
19651236 |
T |
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| Q |
212 |
aatgaatgaattcttaaaccctaaaaccaaaaccctaaaacccttctcctcttatactcatatttatttattgcctcttctatccctctgctaaattacg |
311 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19651237 |
aatgaatgaattcttaaaccctaaaaccaaaacccaaaaacccttctcctcttatactcatatttatttattgcctcttctatccctctgttaaattacg |
19651336 |
T |
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| Q |
312 |
attaaaccttcattcaacta |
331 |
Q |
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|||||||||||||||||||| |
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| T |
19651337 |
attaaaccttcattcaacta |
19651356 |
T |
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