View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_high_1 (Length: 418)
Name: NF6347_high_1
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 779881 - 779672
Alignment:
| Q |
18 |
atcattatcctattgactatgactctccattacaatnnnnnnn-ccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaaactca |
116 |
Q |
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| T |
779881 |
atcattatcctattgactatgactctccattacaataaaacaaaccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaaactca |
779782 |
T |
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| Q |
117 |
tgttataatcatataaaaatgtcaaacagacacaattattatcattcatnnnnnnnnnnttcaaaaatactcaacaagacatcaataacacaaggatcat |
216 |
Q |
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| T |
779781 |
tgttataatcatataaaaatgtcaaacagacacaattgttatcattcat-aaaaaaacattctaaaatactcaacaagacatcaataacacaaggatcat |
779683 |
T |
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| Q |
217 |
gactaatagtt |
227 |
Q |
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||||||||||| |
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| T |
779682 |
gactaatagtt |
779672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 779610 - 779518
Alignment:
| Q |
289 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779610 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
779518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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