View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_high_9 (Length: 241)
Name: NF6347_high_9
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 404634 - 404409
Alignment:
| Q |
1 |
ttccatagttgtatgcgcatcccctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatat--ctgctctattcaacatttttaa |
98 |
Q |
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| T |
404634 |
ttccatagttgtatgcgcatcccctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatatctgctctattcaacatttttaa |
404535 |
T |
|
| Q |
99 |
gcttgagctttcaaattgttgaaaatcaaaaggaacagattcgccgaagtataaatgagatgcttgaagatctctaagagctggacatccagctagaagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
404534 |
gcttgagctttcaaattgttgaaaatcaaaaggaacagattcgccgaagtataaatgagatgcttgaagatctctaagagctggacatccagctagaagt |
404435 |
T |
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| Q |
199 |
gttttaagtgagggcaatgtaaaagg |
224 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
404434 |
gttttaagtgagggcaatgtaaaagg |
404409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 1399341 - 1399259
Alignment:
| Q |
24 |
ctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatctgctctattcaacatttttaagcttgagc |
106 |
Q |
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| T |
1399341 |
ctccacatttgaaagtgatttcaccataaaatagcaatcatggtcggttatatctgctttgttcaacctttttaagcttgagc |
1399259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 965722 - 965787
Alignment:
| Q |
25 |
tccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatctgctctattcaac |
90 |
Q |
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| T |
965722 |
tccaaatttgaaagtgatttcaccggaaaatagcattcacagtcggtaatatctgctctgttcaac |
965787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 45810765 - 45810831
Alignment:
| Q |
24 |
ctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatctgctctattcaac |
90 |
Q |
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||||| ||| |||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||| |
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| T |
45810765 |
ctccaaattcgaaagtgctttcatcggaaaatagcaataacagatagtaatatcagctctcttcaac |
45810831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 10117296 - 10117355
Alignment:
| Q |
24 |
ctccacatttgaaagtgctttcatcggaaaatagcaataatagagggtaatatctgctct |
83 |
Q |
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||||| ||||||||||||||||||||||| ||| |||||| | | |||||||| |||||| |
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| T |
10117296 |
ctccaaatttgaaagtgctttcatcggaatataacaataacacatggtaatatatgctct |
10117355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 1446175 - 1446212
Alignment:
| Q |
24 |
ctccacatttgaaagtgctttcatcggaaaatagcaat |
61 |
Q |
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||||||||||||||||||||||||||||| || ||||| |
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| T |
1446175 |
ctccacatttgaaagtgctttcatcggaacatcgcaat |
1446212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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