View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6347_low_11 (Length: 234)

Name: NF6347_low_11
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6347_low_11
NF6347_low_11
[»] chr4 (13 HSPs)
chr4 (103-232)||(24768231-24768360)
chr4 (13-138)||(24768089-24768214)
chr4 (69-138)||(24835757-24835826)
chr4 (69-138)||(24840649-24840718)
chr4 (143-234)||(12371098-12371189)
chr4 (133-228)||(24842051-24842146)
chr4 (146-232)||(24835897-24835983)
chr4 (149-234)||(24756320-24756405)
chr4 (133-228)||(24837181-24837276)
chr4 (146-232)||(24840789-24840876)
chr4 (146-234)||(12414625-12414713)
chr4 (146-234)||(12418064-12418152)
chr4 (146-234)||(15698662-15698750)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 24768231 - 24768360
Alignment:
Q  103 attctagaatccgtaactctggatatgattaaaataagctacaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaa 202  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  24768231 attctagaatccgtaactctagatatgattaaaataagctataaaaaatatatggttcatcaaagaaatgaaagcacagacatcttgttaaattcataaa 24768330  T
Q  203 ctaaaaatcaatataatatatcaaataact 232  Q
    ||||||||||||||||||||||||||||||    
T  24768331 ctaaaaatcaatataatatatcaaataact 24768360  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 24768089 - 24768214
Alignment:
Q  13 aaattgagtccaacattgaatgtcccatgtaaatgaaattctccacccgtgtccgaattttataattcggagcgggtttttgagttttggattctagaat 112  Q
    |||||||| ||||||| |||||||| |||||||||||||||||||||||| |||  ||||||||||| |||||| |||||||||||| |||||||   ||    
T  24768089 aaattgaggccaacatagaatgtccaatgtaaatgaaattctccacccgtctccagattttataatttggagcgtgtttttgagtttcggattcttagat 24768188  T
Q  113 ccgtaactctggatatgattaaaata 138  Q
    ||||||||||||||||||||||||||    
T  24768189 ccgtaactctggatatgattaaaata 24768214  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 24835757 - 24835826
Alignment:
Q  69 attttataattcggagcgggtttttgagttttggattctagaatccgtaactctggatatgattaaaata 138  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||||||||||| |||||||||||||||    
T  24835757 attttataattcggagcgtgtttttgagtttcagtttctagaatccgtaactcttgatatgattaaaata 24835826  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 24840649 - 24840718
Alignment:
Q  69 attttataattcggagcgggtttttgagttttggattctagaatccgtaactctggatatgattaaaata 138  Q
    |||||||||||||||||| ||||||||||||  | ||||||||||||||||||| |||||||||||||||    
T  24840649 attttataattcggagcgtgtttttgagtttcagtttctagaatccgtaactcttgatatgattaaaata 24840718  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 12371098 - 12371189
Alignment:
Q  143 acaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcc 234  Q
    ||||||||||| |||| |||||||||||||||| || |||||| || |||||||||||||  |||||  |||| ||||||||||||||||||    
T  12371098 acaaaaaatgtgtggtgcatcaaagaaatgaaagcataaacatattattaaattcataaataaaaaagaaataaaatatatcaaataactcc 12371189  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 24842051 - 24842146
Alignment:
Q  133 aaaataagctacaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaat 228  Q
    |||| ||||||| ||||||| ||||||||||||  |||||||| || ||||||||| |||||||  ||||||||||||||||| ||||||| ||||    
T  24842051 aaaacaagctacgaaaaatgaatggttcatcaagaaaatgaaagcataaacatcttattaaatttctaaactaaaaatcaataaaatatataaaat 24842146  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 24835897 - 24835983
Alignment:
Q  146 aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataact 232  Q
    ||||| |||||||||||||||||||||||| || | |||  || ||||||| || | ||||||||||||||||||||||||||||||    
T  24835897 aaaaaggtatggttcatcaaagaaatgaaagcatagacaaattattaaatttattagctaaaaatcaatataatatatcaaataact 24835983  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 24756320 - 24756405
Alignment:
Q  149 aatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcc 234  Q
    |||| ||||||||||||  ||||||||  | ||||||||| ||||||| || ||||||||||||||| ||||||| ||||||||||    
T  24756320 aatgaatggttcatcaagaaaatgaaagaataaacatcttattaaatttatgaactaaaaatcaataaaatatataaaataactcc 24756405  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 24837181 - 24837276
Alignment:
Q  133 aaaataagctacaaaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaat 228  Q
    |||| ||| ||| ||||||| ||||||||||||  |||||||| || ||||||||| |||||||  | ||||||||||||||| ||||||| ||||    
T  24837181 aaaacaagttacgaaaaatgaatggttcatcaagaaaatgaaagcataaacatcttattaaatttctgaactaaaaatcaataaaatatataaaat 24837276  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 24840789 - 24840876
Alignment:
Q  146 aaaaatgtatggttcatcaaagaaatgaaaa-cacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataact 232  Q
    ||||| ||||||||||||||||||||||||| || | |||  || ||||||| || | |||||||| |||||||||||||||||||||    
T  24840789 aaaaaggtatggttcatcaaagaaatgaaaagcatagacaaattattaaatttattagctaaaaattaatataatatatcaaataact 24840876  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 12414713 - 12414625
Alignment:
Q  146 aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcc 234  Q
    |||||||| ||||||||||||||||||||| ||  ||||| ||  || |||||| || |||||||||||| ||||| | ||||||||||    
T  12414713 aaaaatgtgtggttcatcaaagaaatgaaagcatgaacatattaatatattcatgaattaaaaatcaataaaatattttaaataactcc 12414625  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 12418064 - 12418152
Alignment:
Q  146 aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcc 234  Q
    ||||||||||  |||||||||||||||||| ||  ||||| || |||| || || || |||||| ||||| ||||| ||||||||||||    
T  12418064 aaaaatgtataattcatcaaagaaatgaaagcatgaacatattattaagtttatgaattaaaaaccaataaaatatttcaaataactcc 12418152  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 15698750 - 15698662
Alignment:
Q  146 aaaaatgtatggttcatcaaagaaatgaaaacacaaacatcttgttaaattcataaactaaaaatcaatataatatatcaaataactcc 234  Q
    |||||||||||||  ||||| ||||||||| || |  || ||| |||||||||| ||||| ||||||||| |||| || ||||||||||    
T  15698750 aaaaatgtatggtaaatcaatgaaatgaaagcatactcaccttattaaattcatgaactataaatcaataaaatacattaaataactcc 15698662  T

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