View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_low_12 (Length: 211)
Name: NF6347_low_12
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 26558085 - 26558252
Alignment:
| Q |
17 |
aaatcccaacccaaccacccagaaacctgataccacaccgaaagggaggaaagatatgatagaaacaaatgcattgccgattttgactggctatcacagc |
116 |
Q |
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| T |
26558085 |
aaatcccaacccaaccacctagaaacctgataccacactgaaagggaggaaggacaggatagaaacaaatgcaccgccgattttgattggctatcacaga |
26558184 |
T |
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| Q |
117 |
aaacacaccccaccctgtccataaaaattggcacaccacgcctaataagattgttctgcgtagggatt |
184 |
Q |
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| T |
26558185 |
aaacacaccccaccctgtccacaagaattggcacaccacgcctaataagattgttccgtgtagggatt |
26558252 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 30496558 - 30496591
Alignment:
| Q |
21 |
cccaacccaaccacccagaaacctgataccacac |
54 |
Q |
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| T |
30496558 |
cccaacccaaccacccagagacctgataccacac |
30496591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 12834175 - 12834216
Alignment:
| Q |
20 |
tcccaacccaaccacccagaaacctgataccacaccgaaagg |
61 |
Q |
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| T |
12834175 |
tcccaacccaaccacctagagacctgataccacaccggaagg |
12834216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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