View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_low_2 (Length: 370)
Name: NF6347_low_2
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 7563925 - 7563578
Alignment:
| Q |
11 |
agattatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagatggcgatgat |
110 |
Q |
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| T |
7563925 |
agatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagatgacgatgat |
7563826 |
T |
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| Q |
111 |
gaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacccgattttaaactcttgacagctatttcctttccactcggcaa |
210 |
Q |
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| T |
7563825 |
gaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacccgattttaaactcttgacagctatttcctttccactcggtaa |
7563726 |
T |
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| Q |
211 |
cacacccttatggacatagccaaaaccaccttgtcctatcaaatttgaatcaatgaatccgtcggttgcagctgccaattcctcataagtgaatgtgcct |
310 |
Q |
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| T |
7563725 |
cacccccttatggacatagccaaaaccaccttgtcctatcaaatttgaatcaatgaatccgtcggttgcagctgccaattcctcataagtgaatgtgcct |
7563626 |
T |
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| Q |
311 |
cctttaagccctaaagcaaggcttggtgagggaggaggaagaggtggt |
358 |
Q |
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| T |
7563625 |
cctttaagccctaaagcaaggcttggtgagggaggaggaagaggtggt |
7563578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 40 - 249
Target Start/End: Original strand, 33145679 - 33145888
Alignment:
| Q |
40 |
aaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagatggcgatgatgaacacgactaatgatgtcaatctcagct |
139 |
Q |
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| T |
33145679 |
aaattcataaaccaacattctctgtccaccagaaacacaatatccaacaagcgacacaagatgacgatgatgaacacgactaatgatatcaatctcagct |
33145778 |
T |
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| Q |
140 |
tggaactcccgttctccttgtccgctacccgattttaaactcttgacagctatttcctttccactcggcaacacacccttatggacatagccaaaaccac |
239 |
Q |
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| T |
33145779 |
tgaaactcacgttcgccttgtccactacccgcttttaaacttttaacagcaatttcctttccagtaggcaaaattcccttatgaacataaccaaaaccac |
33145878 |
T |
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| Q |
240 |
cttgtcctat |
249 |
Q |
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|||||||||| |
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| T |
33145879 |
cttgtcctat |
33145888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 32902874 - 32902786
Alignment:
| Q |
80 |
tatccaacaagtgaaacaagatggcgatgatgaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacc |
168 |
Q |
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||||||||||| ||||||||||| |||||||||||| ||||| || |||| |||||||| || || |||||||||||||||||||| |
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| T |
32902874 |
tatccaacaagagaaacaagatgtttatgatgaacacggctaataatctcaacttcagcttgaaattcgcgttctccttgtccgctacc |
32902786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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