View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_low_3 (Length: 368)
Name: NF6347_low_3
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 153 - 368
Target Start/End: Complemental strand, 50507593 - 50507391
Alignment:
| Q |
153 |
ttatgattatgatagcggatattttatttatttatgccaaaatattgctatgggttttatagtgctatgaaaaatgcaaatgagcataaatcattttgat |
252 |
Q |
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| T |
50507593 |
ttatgattatgatagcggatattttatttatttatgccaaaatattgctatgggttttatagtgctatgaaaaatgcaaatgagcataaatcattttgat |
50507494 |
T |
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| Q |
253 |
tttttatgatacatttgtaatggtaattaatattggtaatcaattacatttatgagtattagaagtgaatgacccagcttggtaaataaacaggggagag |
352 |
Q |
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| T |
50507493 |
tttttatgatacatttgtattggtaatt-------------aattacatttatgagtattagaagtgaatgacccagcttggtaaataaacaggggagag |
50507407 |
T |
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| Q |
353 |
atggttttgttagtag |
368 |
Q |
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| T |
50507406 |
atggttttgttagtag |
50507391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 50507203 - 50507320
Alignment:
| Q |
40 |
cataaacctccttacgaatgatggtgtcgtttttgtaattggagttgttggcgtaacgaagcttgccattatcagtgaactcaaactccaagaattcgtg |
139 |
Q |
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| T |
50507203 |
cataaacctccttacgaatgatggtgtcgtttttgtaattggagttgttggcgtaacgaagcttgccattgtcagtgaactcaaactccaagaattcgtg |
50507302 |
T |
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| Q |
140 |
accatgcttgcccttatg |
157 |
Q |
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| T |
50507303 |
accatgcttgcccttatg |
50507320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 55279949 - 55279882
Alignment:
| Q |
41 |
ataaacctccttacgaatgatggtgtcgtttttgtaattggagttgttggcgtaacgaagcttgccat |
108 |
Q |
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| T |
55279949 |
ataaacctccttacgaatgattgtatcgtttttgtaattggaattgttagcataacgaagcttaccat |
55279882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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