View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_low_5 (Length: 253)
Name: NF6347_low_5
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 404979 - 404788
Alignment:
| Q |
1 |
tcatcacaaattccaaatttttataccaacgacagtaaattcacaggaatgatatgaagcaattgttagctcagtgacaatagcacaacatgctcatatt |
100 |
Q |
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| T |
404979 |
tcatcacaaattccaaatttttataccaacgacagtaaattcacaggaatgatatgaagcaattgttagctcagtgacaatagcacaacatgctcatatt |
404880 |
T |
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| Q |
101 |
ggtgctaattgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgcaaatattacaaacattctatttgtgat |
192 |
Q |
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| T |
404879 |
ggtgctaattgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgcaaatattacaaacattctatttgtgat |
404788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 972854 - 973049
Alignment:
| Q |
1 |
tcatcacaaattccaaatttttataccaacgacagtaaattcacaggaatgatatgaagcaattgttagctcagtgacaatagcacaacatgctcatatt |
100 |
Q |
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| T |
972854 |
tcatcgcaaattccaagtttctattccaacaacagtaaattcacaaaaatgatatgaagaaattgttacctcagtgataacaacacaacatgctcgtatt |
972953 |
T |
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| Q |
101 |
ggt----gctaattgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgcaaatattacaaacattctatttgtgat |
192 |
Q |
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| T |
972954 |
ggtcctaactaattaaaagataatgaaaagttctcaaataagacatgttttcaaaactcatataggtgctaatattacaaactttctgtttgtgat |
973049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 411138 - 410973
Alignment:
| Q |
3 |
atcacaaattccaaatttttataccaacgacagtaaattcacaggaatgatatgaagcaattgttagctcagtgacaata--gcacaacatgctcatatt |
100 |
Q |
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|||||||||||||||||| | | ||||| |||||||| |||||| || |||||||| ||||||||| |||| |||||| | ||||||||||||||||| |
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| T |
411138 |
atcacaaattccaaatttctgttccaacaacagtaaactcacagaaacgatatgaatcaattgttacctcaatgacaacaacacacaacatgctcatatt |
411039 |
T |
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| Q |
101 |
ggtgctaattgaaaaagaatgaaaagttatcaaataggacatgtattaaaaactcatatccgtgcaaatatta |
173 |
Q |
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| T |
411038 |
tgtgctaaattaaa-------aaaagttctcaaataagacatgcattcaaaactcatattggtgctaatatta |
410973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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