View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6347_low_7 (Length: 250)
Name: NF6347_low_7
Description: NF6347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6347_low_7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 24768741 - 24768498
Alignment:
| Q |
10 |
caaaggccaaccgaacatgtttcgaatatcccc-taacccaccaaactgcactagatgaaccaataaattactatgagttgtcgttgacaaacctaacca |
108 |
Q |
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| T |
24768741 |
caaaggccaaccgaacatgtttcgaatatccccctaacccaccaaactgcactagatgaaccaataaattaccatgagttgtcgttgacaaacctaacca |
24768642 |
T |
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| Q |
109 |
acctgaaactagagaccaaaatcgatcataaaagtgacatttgacaaataaatgatccatgtcttctaacaatccacaaccatctgaacagttgtgataa |
208 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
24768641 |
acctgaaactagagaccaaagccgatcataaaagtcacatttaacaaataaatgatccatgtcttctaacaatccacaaacatccgaacagttgtgataa |
24768542 |
T |
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| Q |
209 |
gttagagcaataatatgccgcctt--acaaagttatacttagtc |
250 |
Q |
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| T |
24768541 |
gttagagcaataatatgccgccttacacaaagttatacttagtc |
24768498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 24841188 - 24841003
Alignment:
| Q |
65 |
tgaaccaataaattactatgagttgtcgttgacaaacctaaccaacctgaaactagagaccaaaatcgatcataaaagtgacatttgacaaataaatgat |
164 |
Q |
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||||||||||| |||| ||||||||||||||| | ||||||||||| |||||||||||||||| |||| ||||||||| |||||| ||| |||||| | |
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| T |
24841188 |
tgaaccaataagttaccatgagttgtcgttgagagacctaaccaacatgaaactagagaccaatgtcgaccataaaagtaacatttaacatataaattgt |
24841089 |
T |
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| Q |
165 |
ccatgtcttctaacaatccacaaccatctgaacagttgtgataagttagagcaataatatgccgccttacaaagttatacttagtc |
250 |
Q |
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| T |
24841088 |
acatgttttctaacaatccacaatctgccgaaatttcgtgatcggttagaggaataatatgcctccttaccaagttatgcttagtc |
24841003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 24836295 - 24836110
Alignment:
| Q |
65 |
tgaaccaataaattactatgagttgtcgttgacaaacctaaccaacctgaaactagagaccaaaatcgatcataaaagtgacatttgacaaataaatgat |
164 |
Q |
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||||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| |||||| ||| |||||| | |
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| T |
24836295 |
tgaaccaataagctaccatgagttgtcgttgaaaaacctaaccaacatgaaactagagaccaatgccgaccataaaagtaacatttaacatataaattgt |
24836196 |
T |
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| Q |
165 |
ccatgtcttctaacaatccacaaccatctgaacagttgtgataagttagagcaataatatgccgccttacaaagttatacttagtc |
250 |
Q |
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| T |
24836195 |
atatgttttctaacaatccaaagcctgccgaaattttgtgatcggttagagcaataatatgcctccttaccaagttatccttagtc |
24836110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 24604056 - 24604146
Alignment:
| Q |
69 |
ccaataaattactatgagttgtcgttgacaaacctaaccaacctgaaactagagaccaaaatcgatcataaaagtgacatttgacaaataa |
159 |
Q |
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| T |
24604056 |
ccaataaagtaccatgaattgttgttgagaatcccaaccaccttgaaactagagaccaaattctgccataaaagtgacatctaacaaataa |
24604146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 43887797 - 43887897
Alignment:
| Q |
41 |
cctaacccaccaaactgcactagatgaaccaataaattactatgagttgtcgttgacaaacctaaccaacctgaaactagagaccaaaatcgatcataaa |
140 |
Q |
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|||| |||||||||||||||||||||| ||||||| || | |||| |||||||| | || |||| ||| ||||||||||||| ||||| ||| |||||| |
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| T |
43887797 |
cctagcccaccaaactgcactagatgatccaataacttcccatgaattgtcgttaagaagcctagccatcctgaaactagaggccaaattcggccataaa |
43887896 |
T |
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| Q |
141 |
a |
141 |
Q |
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| T |
43887897 |
a |
43887897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 2845005 - 2845140
Alignment:
| Q |
39 |
cccctaacccaccaaactgcactagatgaaccaataaattactatgagttgtcgttgacaaacctaaccaacctgaaactagagaccaaaatcgatcata |
138 |
Q |
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|||||||||||||||||| | || | | |||||||||| | |||| |||| |||| ||||||||||||| ||||| ||||| | | | || | |||| |
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| T |
2845005 |
cccctaacccaccaaactaaccgaggtaatccaataaattgccttgagatgtcattgagaaacctaaccaacttgaaattagaggcaagattctaccata |
2845104 |
T |
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| Q |
139 |
aaagtgacatttgacaaataaatgatccatgtcttc |
174 |
Q |
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|| | |||||| |||||||| |||||||||||||| |
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| T |
2845105 |
caaatcacatttcacaaataagtgatccatgtcttc |
2845140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 21934486 - 21934564
Alignment:
| Q |
98 |
aaacctaaccaacctgaaactagagaccaaaatcgatcataaaagtgacatttgacaaataaatgatccatgtcttcta |
176 |
Q |
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|||||||||||||| |||| |||| | ||| |||| ||||||| | |||||| ||||||||||| || |||||||||| |
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| T |
21934486 |
aaacctaaccaaccaaaaacgagagtcaaaagtcgaccataaaaatcacatttaacaaataaatgctcaatgtcttcta |
21934564 |
T |
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