View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6348_high_1 (Length: 409)
Name: NF6348_high_1
Description: NF6348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6348_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 16542789 - 16542469
Alignment:
| Q |
17 |
tgctagacaaatggttgcgactaaagatgaaagttgtgacatattggagatcgatctatgggtttatgttaccacaagaccaataaattgaagaggaaga |
116 |
Q |
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| T |
16542789 |
tgctagacaaatggttgcgaataaagatgaaagttgtgacatattggagatggatctatgggtttatgttaccacaagaccaataaattgaagaggaaga |
16542690 |
T |
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| Q |
117 |
agatgataatagtcaaagacagccaattgtggatttcttggagaaattggaaattggtcatgcttcttcattagagatatctagctttgtgttttctaat |
216 |
Q |
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|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16542689 |
agatgataatagtcaaagacagccaattctgggtttgttggagaaattggaaattggtcatgcttcttcataagagatatctagctttgtgttttctaat |
16542590 |
T |
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| Q |
217 |
tggtattgtaatcctcttgtatgtttaaaaagcatataaagatttattttgtaagggtttgagtacccccttgtactcattgtttaataccaaagcaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16542589 |
tggtattgtaatcctcttgtatgtttaaaaagcatataaagatttattttgtaagggtttgagtacccccttgtactcattgtttaataccagagcaaac |
16542490 |
T |
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| Q |
317 |
aactattgtagtttttctttc |
337 |
Q |
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| T |
16542489 |
aactattgtagtttttctttc |
16542469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 16533967 - 16533726
Alignment:
| Q |
18 |
gctagacaaatggttgcgactaaagatgaaagttgtgacatattggagatcgatctatgggtttatgttaccacaagaccaataaattgaagaggaagaa |
117 |
Q |
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| T |
16533967 |
gctagacaaatggttgcgaataaagatgaaagttgtgacatattggagatggatctatgggtttatgttaccacaagaccaataaattgaagaggaagaa |
16533868 |
T |
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| Q |
118 |
gatgataatagtcaaagacagccaattgtggatttcttggagaaattggaaattggtcatgcttcttcattagagatatctagctttgtgttttctaatt |
217 |
Q |
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| T |
16533867 |
gatgataatagtcaaagacagccaattctgggtttgttggagaaattggaaattggtcatgcttcttcataagagatatctagctttgtgttttctaatt |
16533768 |
T |
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| Q |
218 |
ggtattgtaatcctcttgtatgtttaaaaagcatataaagat |
259 |
Q |
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| T |
16533767 |
aatattgtaatcctcttgtatgtttaaaaagcatataaagat |
16533726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 251 - 337
Target Start/End: Complemental strand, 16532892 - 16532806
Alignment:
| Q |
251 |
tataaagatttattttgtaagggtttgagtacccccttgtactcattgtttaataccaaagcaaacaactattgtagtttttctttc |
337 |
Q |
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| T |
16532892 |
tataaagatttattttgtaagggtttgagtacccccttgtactcattgtttaataccagagcaaacaactattgtagtttttctttc |
16532806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 16532788 - 16532755
Alignment:
| Q |
357 |
tattgtagtttctgaaagtataacatgttacatt |
390 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16532788 |
tattgtagtttctgaaagtataacatgttacatt |
16532755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 390
Target Start/End: Complemental strand, 16542451 - 16542418
Alignment:
| Q |
357 |
tattgtagtttctgaaagtataacatgttacatt |
390 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
16542451 |
tattgtagtttctgaaagtataacatgttacatt |
16542418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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