View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6348_high_2 (Length: 391)
Name: NF6348_high_2
Description: NF6348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6348_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 4052177 - 4052548
Alignment:
| Q |
5 |
gatggacatcatcacaattagccaaaaacctgaaaagggtaccttaaattatgcaggatgatgaaccaagagatggaagagagtatgaagaagccatgaa |
104 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4052177 |
gatgaacatcataacaattagccaaaaacctgaaaagggtaccttaaattatgcaggatgatgaaccaagagatggaagagagtatgaagaagccatgaa |
4052276 |
T |
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| Q |
105 |
actcaggatggatagcgcaagagaagatcaatcaataaaatggaaccnnnnnnngaagacattctatggcgctatccctcctgagcttaacagattcttt |
204 |
Q |
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| T |
4052277 |
actcaggatggatagcgcaagagaagatcaatcaataaaatggaaccaaaaaaagaagacattctatggcgctatccctcctgagcttaacagattcttt |
4052376 |
T |
|
| Q |
205 |
cacacaaaaaatacaagagctatagcattgagttgaagcttataataaaccaactaactcattttaaataaataaattatttaattaaaatgcttgctag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4052377 |
cacacaaaaaatacaagagctatagcattgagttgaagcttataataaaccaactaactcattttaaataaataaattatttaattaaaatgcttgctag |
4052476 |
T |
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| Q |
305 |
gtagataccattattatgaaacatttattgcttctgatacatggtggggagggacgtaacagaggtatttat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4052477 |
gtagataccattattatgaaacatttattgcttctgatacatggtggggagggacgtaacagaggtatttat |
4052548 |
T |
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