View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6348_low_4 (Length: 260)
Name: NF6348_low_4
Description: NF6348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6348_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 251603 - 251342
Alignment:
| Q |
3 |
gagaataaaaagcagaaaatttatgaataattatagtctcacgtatacaaagtacctaagcaaa-catggaaatgaatgatttctaagaacacattccca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
251603 |
gagaataaaaagcagaaaatttatgaataattatagtctcacgtatacaaagtacctaagcaaaacatggaaatgaatgatttctaagaacacattccca |
251504 |
T |
|
| Q |
102 |
ccaataaatttgcaatctataat------------------gttcatgttgtgcataagaacattatagcctatgtacatgctaaagcgctcgaccacca |
183 |
Q |
| |
|
|||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
251503 |
ccaataaatttgtaatctatgaaacaaacaccaaggtagtagttcatgttgtgcataagaacattatagcctatgtacacgctaaagcgctcgaccacca |
251404 |
T |
|
| Q |
184 |
actcgcataaaagtatcttcttaatgattaatcattgtctgatcaacatcaaatggtgatcc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
251403 |
actcgcataaaagtatcttcttaatgattaatcattgtctgatcaacatcaaatggtgatcc |
251342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University