View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6348_low_6 (Length: 238)

Name: NF6348_low_6
Description: NF6348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6348_low_6
NF6348_low_6
[»] chr4 (3 HSPs)
chr4 (27-134)||(1025995-1026102)
chr4 (62-105)||(6561417-6561460)
chr4 (62-105)||(36698204-36698247)
[»] chr8 (1 HSPs)
chr8 (60-106)||(40209920-40209966)
[»] chr2 (3 HSPs)
chr2 (60-105)||(20070373-20070418)
chr2 (62-116)||(41825076-41825130)
chr2 (1-33)||(35517011-35517043)
[»] scaffold0216 (1 HSPs)
scaffold0216 (60-105)||(28771-28816)
[»] chr7 (2 HSPs)
chr7 (64-105)||(36441969-36442010)
chr7 (58-106)||(45916511-45916559)
[»] chr5 (1 HSPs)
chr5 (64-116)||(13312819-13312871)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 1025995 - 1026102
Alignment:
Q  27 tacagtttttgccatcattaattattatttcttgtgtgtttgtttgaaggtaagaaattacattgcttgaaatgatattctcgggaataaattcataacc 126  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1025995 tacagtttttgccatcatcaattattatttcttgtgtgtttgtttcaaggtaagaaattacattgcttaaaatgatattttcgggaataaattcataacc 1026094  T
Q  127 atatgttt 134  Q
    ||||||||    
T  1026095 atatgttt 1026102  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 6561460 - 6561417
Alignment:
Q  62 gtgtttgtttgaaggtaagaaattacattgcttgaaatgatatt 105  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||    
T  6561460 gtgtttgtttcaaggtaagaaattaaattccttgaaatgatatt 6561417  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 36698247 - 36698204
Alignment:
Q  62 gtgtttgtttgaaggtaagaaattacattgcttgaaatgatatt 105  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||    
T  36698247 gtgtttgtttcaaggtaagaaattaaattccttgaaatgatatt 36698204  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 40209920 - 40209966
Alignment:
Q  60 gtgtgtttgtttgaaggtaagaaattacattgcttgaaatgatattc 106  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||    
T  40209920 gtgtgttcgttttaaggtaagaaattacattccttgaaatgatattc 40209966  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 20070373 - 20070418
Alignment:
Q  60 gtgtgtttgtttgaaggtaagaaattacattgcttgaaatgatatt 105  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||    
T  20070373 gtgtgtttgtttcaaggtaagaaattaaattccttgaaatgatatt 20070418  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 41825130 - 41825076
Alignment:
Q  62 gtgtttgtttgaaggtaagaaattacattgcttgaaatgatattctcgggaataa 116  Q
    |||||||||| |||| ||||||||||||| |||||||||| |||||  |||||||    
T  41825130 gtgtttgtttcaaggaaagaaattacattccttgaaatgacattcttaggaataa 41825076  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35517043 - 35517011
Alignment:
Q  1 ttgcttatattattggacggagggagtacagtt 33  Q
    ||||||||||||| |||||||||||||||||||    
T  35517043 ttgcttatattatgggacggagggagtacagtt 35517011  T

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Target: scaffold0216 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 28771 - 28816
Alignment:
Q  60 gtgtgtttgtttgaaggtaagaaattacattgcttgaaatgatatt 105  Q
    |||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  28771 gtgtgtttgtttcaagttaagaaattaaattccttgaaatgatatt 28816  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 36441969 - 36442010
Alignment:
Q  64 gtttgtttgaaggtaagaaattacattgcttgaaatgatatt 105  Q
    |||||||| |||||||||||||| ||| ||||||||||||||    
T  36441969 gtttgtttcaaggtaagaaattatattccttgaaatgatatt 36442010  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 45916511 - 45916559
Alignment:
Q  58 ttgtgtgtttgtttgaaggtaagaaattacattgcttgaaatgatattc 106  Q
    |||||||||||||| || ||||||||||||||| |||  ||||||||||    
T  45916511 ttgtgtgtttgtttcaatgtaagaaattacattccttagaatgatattc 45916559  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 13312819 - 13312871
Alignment:
Q  64 gtttgtttgaaggtaagaaattacattgcttgaaatgatattctcgggaataa 116  Q
    ||||||||  ||| ||||||||||||| |||| |||||||||||| |||||||    
T  13312819 gtttgtttcgagggaagaaattacattccttggaatgatattctcaggaataa 13312871  T

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