View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6349_high_1 (Length: 571)

Name: NF6349_high_1
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6349_high_1
NF6349_high_1
[»] chr4 (2 HSPs)
chr4 (280-548)||(37615638-37615907)
chr4 (265-301)||(17558824-17558860)
[»] chr1 (4 HSPs)
chr1 (24-161)||(52140746-52140883)
chr1 (263-324)||(6923510-6923571)
chr1 (167-210)||(52140901-52140944)
chr1 (62-94)||(52131249-52131281)
[»] chr8 (3 HSPs)
chr8 (36-138)||(17524854-17524955)
chr8 (142-266)||(17524437-17524571)
chr8 (264-301)||(16367881-16367918)
[»] chr6 (1 HSPs)
chr6 (341-515)||(22083571-22083733)
[»] chr3 (2 HSPs)
chr3 (261-302)||(52130754-52130795)
chr3 (265-301)||(5561552-5561588)
[»] chr7 (1 HSPs)
chr7 (266-302)||(24763319-24763355)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 280 - 548
Target Start/End: Original strand, 37615638 - 37615907
Alignment:
Q  280 ccgtgctgccgcatgggtcataatttgctaaaaatattagttgaaagcaatc---atatatccgataaaattaatatatagttactcaatgtaccaaatt 376  Q
    ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||    |||||||| |||||||||||||||||||||||||| |||  ||||    
T  37615638 ccgtgctgctgcacgggtcataatttactaaaactattagttgaaagccattgttatatatccaataaaattaatatatagttactcaatatactgaatt 37615737  T
Q  377 gttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattat--agatatgatagacatacataaccataattgtccggc 474  Q
    ||||||||  |||||||||||||    |||||| |||| ||||||||||||||||||| |    |||||||| ||||||||||| |||||||||| ||||    
T  37615738 gttctgacgtaatgcgattaatt----gacgtacgatcgtcttacataggttaaaaaaattcgaagatatgagagacatacatagccataattgttcggc 37615833  T
Q  475 ctattttactccaccctgaatttaaatatatcaattcaaagcaaattgactaacatagttggtttcttataagt 548  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37615834 ctatgttactccaccctgaatttaaatatatcaattcaaagcaaattgactaacatagttggtttctaataagt 37615907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 17558824 - 17558860
Alignment:
Q  265 aactagattgtctacccgtgctgccgcatgggtcata 301  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcata 17558860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 52140746 - 52140883
Alignment:
Q  24 tagtggaagatgtatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52140746 tagtggaagatgtatagaaaattgtaaaagtaagcttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgct 52140845  T
Q  124 aatttaattcgatgtatttatgtacaaacagttgccac 161  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52140846 aatttaattcgatgtatttatgtacaaacagttgccac 52140883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 6923571 - 6923510
Alignment:
Q  263 taaactagattgtctacccgtgctgccgcatgggtcataatttgctaaaaatattagttgaa 324  Q
    |||||||||| |||||||||||| || ||| ||||||||  | |||||||||||||||||||    
T  6923571 taaactagatcgtctacccgtgcagcagcacgggtcatatatagctaaaaatattagttgaa 6923510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 52140901 - 52140944
Alignment:
Q  167 agcttgattttgagttctcttatcctcctctgcaattggccaac 210  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||    
T  52140901 agcttaattttgagttctcttaatctcctctgcaattggccaac 52140944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 52131249 - 52131281
Alignment:
Q  62 gtatttattacttagagattggaaattggaatg 94  Q
    |||||||||||| ||||||||||||||||||||    
T  52131249 gtatttattactaagagattggaaattggaatg 52131281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 17524955 - 17524854
Alignment:
Q  36 tatagaaaattgtaaaagtaagtttggtatttattacttagagattggaaattggaatgtatgaagtaccagtggccacggtattgctaatttaattcga 135  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||    
T  17524955 tatagaaaattgtaaaagtaactt-ggtatttattacttagagattggaaattggaatgtatgaagtcctactggccacggtattgctaatttaattcga 17524857  T
Q  136 tgt 138  Q
    |||    
T  17524856 tgt 17524854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 142 - 266
Target Start/End: Complemental strand, 17524571 - 17524437
Alignment:
Q  142 tatgtacaaacagttgccacttacgag---------cttgattttgagttctcttatcctcctctgcaattggccaa-catttgagcaagagaaacttgg 231  Q
    |||||||||||||||||||||||||||         ||| ||||||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||    
T  17524571 tatgtacaaacagttgccacttacgagtaattaaagcttaattttgagttctcttaatctcctctgcaattggccaaacattggagcaagagaaacttgg 17524472  T
Q  232 tagaataccgcgatggttcacacaaatttgttaaa 266  Q
    |||| |||||||||| ||||||||||||| |||||    
T  17524471 tagagtaccgcgatgtttcacacaaatttcttaaa 17524437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 16367918 - 16367881
Alignment:
Q  264 aaactagattgtctacccgtgctgccgcatgggtcata 301  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcata 16367881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 515
Target Start/End: Complemental strand, 22083733 - 22083571
Alignment:
Q  341 ataaaattaatatatagttactcaatgtaccaaattgttctgactaaatgcgattaattaattgacgtatgatcatcttacataggttaaaaaattatag 440  Q
    |||||||||| |||||||||||||||||||  ||||||||||||  ||||||||||||| |    ||||||||| ||||||||||||  ||        |    
T  22083733 ataaaattaagatatagttactcaatgtactgaattgttctgacgtaatgcgattaattca----cgtatgatcgtcttacataggtcgaa--------g 22083646  T
Q  441 atatgatagacatacataaccataattgtccggcctattttactccaccctgaatttaaatatatcaattcaaag 515  Q
    |||||| ||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  22083645 atatgagagacatacatagccataactgttcggcctatgttactccaccctgaatttaaatatatcaattcaaag 22083571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 52130795 - 52130754
Alignment:
Q  261 gttaaactagattgtctacccgtgctgccgcatgggtcataa 302  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  52130795 gttagactagattgtctacccgtgctgccgcacgggtcataa 52130754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 5561552 - 5561588
Alignment:
Q  265 aactagattgtctacccgtgctgccgcatgggtcata 301  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  5561552 aactagatcgtctacccgtgctgccgcacgggtcata 5561588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 24763355 - 24763319
Alignment:
Q  266 actagattgtctacccgtgctgccgcatgggtcataa 302  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24763355 actagattgtctacccgtgctgccgcacgggtcataa 24763319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University