View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6349_high_10 (Length: 264)
Name: NF6349_high_10
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6349_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 45048925 - 45049159
Alignment:
| Q |
13 |
aaaatcaattatcactctcatcaaatcagcaaagaaatattagaaattcactcttcttcccaattttaaaatgatacttcaatcaagtatatggatttaa |
112 |
Q |
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| T |
45048925 |
aaaatcaattatcactctcatcaaatcagcaaagaaaaattagaaattcactcttcttcccaattttaaaatgatacttcaaccaagtatatggatttaa |
45049024 |
T |
|
| Q |
113 |
atgatgtacaattttttggttagctcttaattttttaaagaagcatattggacacatctctttcttttggttttgttattagtgattctcctttctttaa |
212 |
Q |
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| T |
45049025 |
atgatgtacaattttttggttagctcttaattttttaaagaagcatattgcacacatctctttcttttggttttgttattagtgattctcctttctttaa |
45049124 |
T |
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| Q |
213 |
attggtctttcaatttgattttgttatttgtacct |
247 |
Q |
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| T |
45049125 |
attggtctttcaatttgattttgttatttgtacct |
45049159 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 10671490 - 10671442
Alignment:
| Q |
183 |
ttttgttattagtgattctcctttctttaaattggtctttcaatttgat |
231 |
Q |
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| T |
10671490 |
ttttgttatttgtgattctcctttctttcaattggtctttgtatttgat |
10671442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 34985215 - 34985254
Alignment:
| Q |
183 |
ttttgttattagtgattctcctttctttaaattggtcttt |
222 |
Q |
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| T |
34985215 |
ttttgttattagtgattttcctttctttcaattggtcttt |
34985254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 34026903 - 34026942
Alignment:
| Q |
183 |
ttttgttattagtgattctcctttctttaaattggtcttt |
222 |
Q |
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| T |
34026903 |
ttttgttattagtgattttcctttctttcaattggtcttt |
34026942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 34025981 - 34026013
Alignment:
| Q |
127 |
tttggttagctcttaattttttaaagaagcata |
159 |
Q |
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| T |
34025981 |
tttggttagctcttaatttttgaaagaagcata |
34026013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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