View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6349_high_13 (Length: 225)

Name: NF6349_high_13
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6349_high_13
NF6349_high_13
[»] chr7 (1 HSPs)
chr7 (34-180)||(45937963-45938112)
[»] chr4 (2 HSPs)
chr4 (33-162)||(5715442-5715575)
chr4 (34-124)||(5725716-5725805)
[»] chr2 (4 HSPs)
chr2 (34-124)||(29960509-29960601)
chr2 (34-115)||(295921-296000)
chr2 (34-113)||(302558-302636)
chr2 (140-186)||(29960462-29960504)
[»] chr3 (2 HSPs)
chr3 (34-124)||(18649486-18649575)
chr3 (36-115)||(41925118-41925196)
[»] scaffold0038 (1 HSPs)
scaffold0038 (69-159)||(49537-49628)
[»] chr6 (1 HSPs)
chr6 (69-159)||(28249375-28249466)
[»] chr8 (1 HSPs)
chr8 (34-115)||(37790983-37791063)
[»] chr5 (1 HSPs)
chr5 (34-115)||(690202-690282)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 45938112 - 45937963
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaa---gttgtaaaaac 130  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||   |||||||||||    
T  45938112 tgttagaacaattccctatgttctatgcacagcggaagtgcttatgaaaaataagatgtttctaagcaagatgaaaataacataaagttgttgtaaaaac 45938013  T
Q  131 tgaagagagaaaactaatgaatttttattgatcgttgatacttatttaca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45938012 tgaagagagaaaactaatgaatttttattgatcgttgatacttatttaca 45937963  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 162
Target Start/End: Complemental strand, 5715575 - 5715442
Alignment:
Q  33 atgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaa---gttgtaaaaa 129  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| |||   ||||||||||    
T  5715575 atgttagaacaattcactatgttctatgcacagtgaaagtgcttatgaaaaataagttgtttctaagcaagatg-aaataacataaagttgttgtaaaaa 5715477  T
Q  130 ctgaagaga--gaaaactaatgaatttttattgat 162  Q
    |||||||||   |||||||||||||||||||||||    
T  5715476 ctgaagagaagaaaaactaatgaatttttattgat 5715442  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 5725716 - 5725805
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgt 124  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  5725716 tgttagaacaattcactatgttctatgcacagcagaagtgcttataaaaaataagttgtttctaagcaagatg-aaataacataaagttgt 5725805  T

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Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 29960601 - 29960509
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttcta--agcaagatgaaaataacacaaagttgt 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||| ||||||||    
T  29960601 tgttagaacaattcactatgttctatgcacagcggaagtgcttatgaaaaataagttatttctaagagcaagatgaaaataacaaaaagttgt 29960509  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 296000 - 295921
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 115  Q
    |||||||||||| | |||||||||||||||||||||| ||| ||||  ||||||||||||||   ||||||||||||||||||    
T  296000 tgttagaacaat-cgctatgttctatgcacagcggaaagtgcttat--aaaataagttgtttaagagcaagatgaaaataaca 295921  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 302636 - 302558
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataa 113  Q
    |||||||||||| | ||||||||||||| |||||||| ||| |||| ||||||||| ||||| | ||||||||||||||||    
T  302636 tgttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaaaataagatgtttatgagcaagatgaaaataa 302558  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 29960504 - 29960462
Alignment:
Q  140 aaaactaatgaatttttattgatcgttgatacttatttacaacacat 186  Q
    |||||||||||||||||||||||||    ||||||||||||||||||    
T  29960504 aaaactaatgaatttttattgatcg----tacttatttacaacacat 29960462  T

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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 18649486 - 18649575
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgt 124  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  18649486 tgttagaacaattcactatgttctatgcacagcagaagtgcttataaaaaataagttgtttctaagcaagatg-aaataacataaagttgt 18649575  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 41925118 - 41925196
Alignment:
Q  36 ttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 115  Q
    |||||||||| | ||||||||||||| |||||||| ||| |||| |||||||||||||||   ||||||||||||||||||    
T  41925118 ttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaaaataagttgtttaagagcaagatgaaaataaca 41925196  T

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Target: scaffold0038 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 49628 - 49537
Alignment:
Q  69 aagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgta--aaaactgaagagagaaaactaatgaatttttatt 159  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||||||||||||    
T  49628 aagtgcttatgaaaaataagctgtttctaagcaagatgaaa-taacataaagttattgtaaaactgaagagagaaaactaatgaatttttatt 49537  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 28249466 - 28249375
Alignment:
Q  69 aagtgtttatgaaaaataagttgtttctaagcaagatgaaaataacacaaagttgta--aaaactgaagagagaaaactaatgaatttttatt 159  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |   ||||||||||||||||||||||||||||||||||    
T  28249466 aagtgcttatgaaaaataagctgtttctaagcaagatgaaa-taacataaagttattgtaaaactgaagagagaaaactaatgaatttttatt 28249375  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 37790983 - 37791063
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 115  Q
    |||||||||||| | ||||||||||||| |||||||| ||| |||| ||||||||| |||||   ||||||||||||||||||    
T  37790983 tgttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaaaataagctgtttaagagcaagatgaaaataaca 37791063  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 690282 - 690202
Alignment:
Q  34 tgttagaacaattcactatgttctatgcacagcggaa-gtgtttatgaaaaataagttgtttctaagcaagatgaaaataaca 115  Q
    |||||||||||| | ||||||||||||| |||||||| ||| |||| ||| |||||||||||  ||| |||||||||||||||    
T  690282 tgttagaacaat-cgctatgttctatgcgcagcggaaagtgcttat-aaatataagttgtttaaaagtaagatgaaaataaca 690202  T

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