View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6349_high_3 (Length: 411)
Name: NF6349_high_3
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6349_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 25700741 - 25700353
Alignment:
| Q |
17 |
aagattgacacatttgtgtgagagaagagttgaggaaggaatatgatacaaccaggtctagaatagactcattctccaactgtgggtgacatgtattact |
116 |
Q |
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| T |
25700741 |
aagattgacgcatttgtgtgagagaagagttgaggaaggaatatgatacaaccaggtctagaatagactcattctccaactgtgggtgacatgtattact |
25700642 |
T |
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| Q |
117 |
tttccagatagaggtgccttcttattcatattattcgtctttatatatata----caaaaaatttacatgagtagaagacaaacgagcaacaaggttgtt |
212 |
Q |
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| T |
25700641 |
ttcccagatagaggtgccttcttattcatattattcgtctttatatatatatatacaaaaaatttacatgagtagaagacaaacgagcaacaaggttgtt |
25700542 |
T |
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| Q |
213 |
aagccttgttagatgacaaaattaatcattgtaaatacaacattcatggacatatgtacctttaattttataatttcaaatagcaaatttaaatttagat |
312 |
Q |
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| T |
25700541 |
aagccttgttagatgacaaaattaatcattgtaaatacaacattcatggacatatgtacctttaattttataatttcaaatagcaaatttaaatttagat |
25700442 |
T |
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| Q |
313 |
aatttcatcttgatctaatcatcactgttgttccgaatgcgtgtaatatcaactactttctaattagggtctgtttgcttcgagaatta |
401 |
Q |
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| T |
25700441 |
aatttcatcttgatctaatcatcactgttgttccgaatgcgagtaatatcaactactttctaattagggtctgtttgcttcgagaatta |
25700353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 959486 - 959540
Alignment:
| Q |
209 |
tgttaagccttgttagatgacaaaattaatcattgtaaatacaacattcatggac |
263 |
Q |
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| T |
959486 |
tgttaggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggac |
959540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 36550100 - 36550062
Alignment:
| Q |
225 |
atgacaaaattaatcattgtaaatacaacattcatggac |
263 |
Q |
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| T |
36550100 |
atgacaaaattaatcatcgtaaatacaatattcatggac |
36550062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 38145963 - 38146015
Alignment:
| Q |
211 |
ttaagccttgttagatgacaaaattaatcattgtaaatacaacattcatggac |
263 |
Q |
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| T |
38145963 |
ttaagtctttttagatgacaaaatcaatcatcgtaaacacaacgttcatggac |
38146015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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