View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6349_high_6 (Length: 319)
Name: NF6349_high_6
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6349_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 47712449 - 47712741
Alignment:
| Q |
19 |
cacctctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaa |
118 |
Q |
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| T |
47712449 |
cacctctccaccatctccatcccccaacgaccgaataatatcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaa |
47712548 |
T |
|
| Q |
119 |
tacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712549 |
tacttctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgat |
47712648 |
T |
|
| Q |
219 |
tagccccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47712649 |
tagccccaataaacacctcaggcaactccaaaaccttcctcaatggcaccaacacatccttcctcaaacgatcacgaaccctataagcataat |
47712741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 19786033 - 19785745
Alignment:
| Q |
23 |
tctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatact |
122 |
Q |
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| T |
19786033 |
tctccaccatctccatcccccaaagactctataatctggtgaggaagcaaagcaccagcagcaatagtagtctttcctgccttcacatccttcaagtact |
19785934 |
T |
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| Q |
123 |
tctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagc |
222 |
Q |
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| T |
19785933 |
tctcaaacctctccttatcatgcttcaaaaacttttccttataaaacttcatcgccacagaagcaactctattgtaaggaatcaaaccccattgattagc |
19785834 |
T |
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| Q |
223 |
cccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
311 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
19785833 |
accaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
19785745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 19795554 - 19795842
Alignment:
| Q |
23 |
tctccaccatctccatcccccaacgaccgaataatgtcatgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatact |
122 |
Q |
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|
|||||||||||| |||| |||| ||| ||||| || ||||||||||||||||||||||| || ||||||||||| | |||||||||||||| |||| |
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| T |
19795554 |
tctccaccatcttcatcatccaaagactctataatctcgtgaggaagcaaagcaccagcagcaatagtagtcttccctgccttcacatcctccaagtact |
19795653 |
T |
|
| Q |
123 |
tctcaaacctctttttatcatgcttcaaaaacttctctttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagc |
222 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| ||||| |||||||| |||| ||||||| |
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| T |
19795654 |
tctcaaacctctccttatcatgcttcaaaaacttctccttataaaacttcatcgccacagaagcaaccctattgtatggaatcaaaccccattgattagc |
19795753 |
T |
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| Q |
223 |
cccaataaacacctcaggcaactccaaaaccttcctcaacggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
311 |
Q |
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| T |
19795754 |
accaataaacacctcaggcaactccaacaccttcctcaacggcaccaacacatctttcctcaaccgatcacgaaccctataagcataat |
19795842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 61 - 311
Target Start/End: Original strand, 15834899 - 15835149
Alignment:
| Q |
61 |
atgaggaagcaaagcaccagcagcgatcgtagtcttccccactttcacatcctccaaatacttctcaaacctctttttatcatgcttcaaaaacttctct |
160 |
Q |
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|||||||||||||||||||||||| || ||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||||||||||||||||| |
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| T |
15834899 |
atgaggaagcaaagcaccagcagccatagtagtcttccctgccttcacatcctgcaagtacttctcaaacctctcctcatcatgcttcaaaaacttctcc |
15834998 |
T |
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| Q |
161 |
ttataaaactccatcgccacagacgcaaccctgttgtaaggaatcaatttccatcgattagccccaataaacacctcaggcaactccaaaaccttcctca |
260 |
Q |
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|||||||||||||| |||||||| |||||||| || ||||||||||| |||| |||||||||||||||||||||||||||| | ||| ||||||||| |
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| T |
15834999 |
ttataaaactccatggccacagaagcaaccctattataaggaatcaaaccccattgattagccccaataaacacctcaggcaattgcaacgccttcctca |
15835098 |
T |
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| Q |
261 |
acggcaccaacacatccttcctcaaacgatcacgaaccctataagtataat |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
15835099 |
acggcaccaacacatctttcctcaaacgatcacgaaccctataagcataat |
15835149 |
T |
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