View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6349_low_2 (Length: 439)

Name: NF6349_low_2
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6349_low_2
NF6349_low_2
[»] chr4 (10 HSPs)
chr4 (12-425)||(1327372-1327785)
chr4 (18-252)||(44186225-44186462)
chr4 (62-252)||(4878151-4878344)
chr4 (333-423)||(4878386-4878476)
chr4 (12-66)||(4877911-4877965)
chr4 (35-100)||(1328887-1328952)
chr4 (356-425)||(44186525-44186594)
chr4 (54-106)||(44187570-44187622)
chr4 (263-312)||(44186459-44186508)
chr4 (263-297)||(4878341-4878375)
[»] scaffold0831 (1 HSPs)
scaffold0831 (42-99)||(1191-1248)
[»] chr8 (1 HSPs)
chr8 (52-104)||(26532496-26532548)
[»] chr7 (1 HSPs)
chr7 (54-95)||(6432748-6432789)


Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Original strand, 1327372 - 1327785
Alignment:
Q  12 aaaggcgatatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattgaagatttgggtgttaaaggggagccnnnnn 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  1327372 aaaggcgatatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattgaagatttgggtgttaaaggggagccttttt 1327471  T
Q  112 nnngtcactttgcaatttgtaagaaaaacctttcgtttcgcggaattaggaattaggtgtttttgtatcccaagtgtatagctttcacccaagagcttta 211  Q
       |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1327472 tttgtcactttgcaatttgtaagaaaaacctttcgtttatcggaattaggaattaggtgtttttgtatcccaagtttatagctttcacccaagagcttta 1327571  T
Q  212 tgagtattcttgtagttaggatttaagattttattaccaagattttgttagcaagttgaatattctgaagccatttcaatacaaattggctttctgtttt 311  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1327572 tgagtattcttgttgttaggatttaagattttattaccaagattttgttagcaagttgaatattctgaagccatttcaatacaaattggctttctgtttt 1327671  T
Q  312 cccttaatatatttactagcaagtgtacgagaaagaaacgtttgtgatacgaacctttctttaccattattatttcaatgctctactctcttacctattg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1327672 cccttaatatatttactagcaagtgtacgagaaagaaacgtttgtgatatgaacctttctttaccattattatttcaatgctctactctcttacctattg 1327771  T
Q  412 catattggtctttt 425  Q
    ||||||||||||||    
T  1327772 catattggtctttt 1327785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 44186225 - 44186462
Alignment:
Q  18 gatatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattgaagatttgggtgttaaaggggagccnnnnnnnngtc 117  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||          |||    
T  44186225 gatatattctttataaaaaatgacaatgaaatagcttgttttgatttaaatactcaaacaattgaagatctgggtgttaaaggggagtatttttgttgtc 44186324  T
Q  118 actttgcaatttgtaagaaaaacctt---tcgtttcgcggaattaggaattaggtgtttttgtatcccaagtgtatagctttcacccaagagctttatga 214  Q
    |||||||||||| |||||||||||||   ||||||||| ||||||||| |||||||||| ||||||| || | |||||| ||||| ||||||||||||||    
T  44186325 actttgcaatttataagaaaaaccttctttcgtttcgccgaattaggagttaggtgtttctgtatccaaactttatagcgttcactcaagagctttatga 44186424  T
Q  215 gtattcttgtagttaggatttaagattttattaccaag 252  Q
    ||| | |||| ||||||||||||||||||||| |||||    
T  44186425 gtactgttgttgttaggatttaagattttatttccaag 44186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 62 - 252
Target Start/End: Original strand, 4878151 - 4878344
Alignment:
Q  62 tttaaatacccaaacaattgaagatttgggtgttaaaggggagccnnnnnnnngtcactttgcaatttgtaagaaaaaccttt---cgtttcgcggaatt 158  Q
    |||||||||||| ||||||||||||||||||||||||| ||||          ||||||||||||||| |||| ||||| ||    |||| ||| |||||    
T  4878151 tttaaatacccacacaattgaagatttgggtgttaaagaggagtatttttgttgtcactttgcaatttataagcaaaacattcgtccgttacgccgaatt 4878250  T
Q  159 aggaattaggtgtttttgtatcccaagtgtatagctttcacccaagagctttatgagtattcttgtagttaggatttaagattttattaccaag 252  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||    
T  4878251 aggaattaggtgtttctgtatcccaagtttatagcgttcacccaagagctttatgagtactgttgttgttaggatttaagattttatttccaag 4878344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 333 - 423
Target Start/End: Original strand, 4878386 - 4878476
Alignment:
Q  333 agtgtacgagaaagaaacgtttgtgatacgaacctttctttaccattattatttcaatgctctactctcttacctattgcatattggtctt 423  Q
    ||||||||||||||| || ||||||||| |||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||| ||||    
T  4878386 agtgtacgagaaagacacatttgtgatatgaacctttctttaccatttttatttcaatgctctgctctctttcatattgcatattgttctt 4878476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 4877911 - 4877965
Alignment:
Q  12 aaaggcgatatattctttctaaaaaatgacaatgaagtagcttgttttgatttaa 66  Q
    ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  4877911 aaaggtgatatattctttataaaaaatgacaatgaaatagcttgttttgatttaa 4877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 1328887 - 1328952
Alignment:
Q  35 aaatgacaatgaagtagcttgttttgatttaaatacccaaacaattgaagatttgggtgttaaagg 100  Q
    ||||||||||| | |||| |||||||||||||||||||||| |||||||| | |||||||||||||    
T  1328887 aaatgacaatggattagcctgttttgatttaaatacccaaataattgaaggtatgggtgttaaagg 1328952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 44186525 - 44186594
Alignment:
Q  356 tgatacgaacctttctttaccattattatttcaatgctctactctcttacctattgcatattggtctttt 425  Q
    ||||| ||||||| |||||||||||||||||||||||||| || |||| |||| ||||||||| ||||||    
T  44186525 tgatatgaaccttcctttaccattattatttcaatgctcttctatctttcctactgcatattgttctttt 44186594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 44187570 - 44187622
Alignment:
Q  54 tgttttgatttaaatacccaaacaattgaagatttgggtgttaaaggggagcc 106  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  44187570 tgttttgatttaaatgcccaaacaattgaagatatgggtgttaaaggcgagcc 44187622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 44186459 - 44186508
Alignment:
Q  263 caagttgaatattctgaagccatttcaatacaaattggctttctgttttc 312  Q
    |||||||||| ||||||||||||||||||| |||| ||||| ||||||||    
T  44186459 caagttgaatgttctgaagccatttcaatagaaatgggcttgctgttttc 44186508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 4878341 - 4878375
Alignment:
Q  263 caagttgaatattctgaagccatttcaatacaaat 297  Q
    |||||||||| ||||||||||||||||||||||||    
T  4878341 caagttgaatgttctgaagccatttcaatacaaat 4878375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 1248 - 1191
Alignment:
Q  42 aatgaagtagcttgttttgatttaaatacccaaacaattgaagatttgggtgttaaag 99  Q
    |||||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  1248 aatgaattggcttgttttgacttaattacccaaacaattgaagatttgggtgttaaag 1191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 26532496 - 26532548
Alignment:
Q  52 cttgttttgatttaaatacccaaacaattgaagatttgggtgttaaaggggag 104  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  26532496 cttgttttgatttaaatacccaaagaattgatgattttggtgttaaaggggag 26532548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 6432748 - 6432789
Alignment:
Q  54 tgttttgatttaaatacccaaacaattgaagatttgggtgtt 95  Q
    |||||||||||||| ||||||||||||||| |||||||||||    
T  6432748 tgttttgatttaaacacccaaacaattgaaaatttgggtgtt 6432789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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