View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6349_low_4 (Length: 377)

Name: NF6349_low_4
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6349_low_4
NF6349_low_4
[»] chr4 (8 HSPs)
chr4 (31-216)||(24406228-24406419)
chr4 (31-269)||(24420158-24420386)
chr4 (65-202)||(24471268-24471402)
chr4 (31-216)||(24475844-24476030)
chr4 (271-318)||(24406184-24406231)
chr4 (31-71)||(24406481-24406521)
chr4 (31-86)||(24477476-24477531)
chr4 (59-88)||(24406458-24406487)
[»] chr2 (1 HSPs)
chr2 (31-88)||(41899834-41899891)
[»] chr1 (1 HSPs)
chr1 (31-83)||(11902065-11902117)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 24406419 - 24406228
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccacc------atctccttcacctcctcgatatcatccctacctctataactcacccccacctc 124  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  24406419 tcaccgccacctccttatatctacaagactccacctccacctccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctc 24406320  T
Q  125 ccgcgtattaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406319 ccgcgtattaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 24406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 269
Target Start/End: Complemental strand, 24420386 - 24420158
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgt 130  Q
    ||||| || ||||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||||   |    
T  24420386 tcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatct 24420287  T
Q  131 attaagctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaa 230  Q
    ||||||||| ||| |||    | ||||||   |||||||||||||| |||| ||||||||||||||||||||||| || ||||||||       ||||||    
T  24420286 attaagcttccggctat---tatttgaaaaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaa 24420197  T
Q  231 acagtctactctccacattgaattaagagccttattttg 269  Q
    | ||||||  ||  ||| |||||||||||||||||||||    
T  24420196 aaagtctatgctttacagtgaattaagagccttattttg 24420158  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 65 - 202
Target Start/End: Original strand, 24471268 - 24471402
Alignment:
Q  65 ctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttt 164  Q
    ||||||||||||| |||||||||| |||||||||||||||||| | ||||||||| ||||||   |||||||||| ||| |||    | |||||||||||    
T  24471268 ctccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctat---catttgaaattttt 24471364  T
Q  165 tcaatgaattatgttcaacattgttgtggttaatttgt 202  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  24471365 tcaatgaattatattcagcattgttgtggttaatttgt 24471402  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 24476030 - 24475844
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgt 130  Q
    ||||| || ||||||| ||| || ||| |||| ||||| |||||||| | |||||||| || |||| || | ||||| ||||||||||| |||||||  |    
T  24476030 tcaccaccgcctccttgtatttagaagtctcctcctcccccatctccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtct 24475931  T
Q  131 attaag-ctttcggatataacaacttgaaattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt 216  Q
    |||||| ||| ||| ||||   | ||||||||||||||| ||||||| |||| ||||||| ||||||||||||||  ||||||||||    
T  24475930 attaaggcttccggctatagttatttgaaattttttcaaagaattatattcagcattgttctggttaatttgtatcgaagcttttgt 24475844  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 24406231 - 24406184
Alignment:
Q  271 ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24406231 ttgtagttcaattgtgaatgtatggtgttcatccataagtctatagta 24406184  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 24406521 - 24406481
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccacc 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24406521 tcaccgccacctccttatatctacaagactccacctccacc 24406481  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 24477531 - 24477476
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcc 86  Q
    ||||| |||||||| ||| |||||||| | |||||||| |||||||||||||||||    
T  24477531 tcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcc 24477476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 24406487 - 24406458
Alignment:
Q  59 ctccacctccaccatctccttcacctcctc 88  Q
    ||||||||||||||||||||||||||||||    
T  24406487 ctccacctccaccatctccttcacctcctc 24406458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 41899891 - 41899834
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacctcctc 88  Q
    |||||||| ||||| ||| | |||||| ||||||||||||| ||| ||||||||||||    
T  41899891 tcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctc 41899834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11902065 - 11902117
Alignment:
Q  31 tcaccgccacctccttatatctacaagactccacctccaccatctccttcacc 83  Q
    ||||| |||||||||||| | |||||| | ||||| |||||||||||||||||    
T  11902065 tcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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