View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6349_low_5 (Length: 364)
Name: NF6349_low_5
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6349_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 346
Target Start/End: Complemental strand, 35019234 - 35018919
Alignment:
| Q |
30 |
attaattagcacctattcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataa------- |
122 |
Q |
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| T |
35019234 |
attaattagcacctattcatcattgtattagttgcctaaggttatccacatttcttaaaaaataaagttggctaaatggtcaaatccttataaattataa |
35019135 |
T |
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| Q |
123 |
tgctaacttaaaggcaaaatgtgaacaagttatggatttatgatgtttatatattcacgttgcatgtcaagctatatgaactcaatttgtattacttaaa |
222 |
Q |
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| T |
35019134 |
tgctaacctaaaggcaaaatgtgaacaagttatggatttatgatgttcatatattcacgttgcatgtcaagctatatgaactc-atttgtattacttaaa |
35019036 |
T |
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| Q |
223 |
tataaagtagctttcagaaagaaagnnnnnnngacatcatacatctttgtatttatttattctattcatttttgtcatacgatattttttagcataagtg |
322 |
Q |
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||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35019035 |
tataaagtagctttcaggaaaaaa-------agacatcatacatctttgtatttatttattctattcatttttgtcatacgatattttttagcataagtg |
35018943 |
T |
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| Q |
323 |
gaatgatatttgatgttactcttg |
346 |
Q |
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|||||||||||||||||||||||| |
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| T |
35018942 |
gaatgatatttgatgttactcttg |
35018919 |
T |
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