View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6349_low_8 (Length: 302)

Name: NF6349_low_8
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6349_low_8
NF6349_low_8
[»] chr3 (1 HSPs)
chr3 (1-302)||(47712712-47713013)
[»] chr5 (2 HSPs)
chr5 (1-302)||(19785473-19785774)
chr5 (1-302)||(19795813-19796114)
[»] chr6 (1 HSPs)
chr6 (1-302)||(15835120-15835421)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 47712712 - 47713013
Alignment:
Q  1 tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47712712 tcaaacgatcacgaaccctataagcataatgcgcctcctccacaccttcatactcctccctaggaaaaatcctcttcgcgatactctcacacaacaatgt 47712811  T
Q  101 cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712812 cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa 47712911  T
Q  201 caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct 300  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712912 caatcagcaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct 47713011  T
Q  301 ct 302  Q
    ||    
T  47713012 ct 47713013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 19785774 - 19785473
Alignment:
Q  1 tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||||||||| |||||||||||||  |  ||    
T  19785774 tcaaacgatcacgaaccctataagcataatgtgcctcctccacaccttcatattcctcccgagggaagatcctctttgcaatactctcacacagaagagt 19785675  T
Q  101 cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa 200  Q
    ||  | |||||| ||||||||||| ||||| |||||||| |||||||| || || ||  ||| | ||||| |||||||||||| || ||| ||||| |||    
T  19785674 cgatcgatcaaaggaagagtcaacagaagggcaccatttagcagcaaggctgattttattgggcaacccagatttcaaaaactgaagatccttcttcaaa 19785575  T
Q  201 caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct 300  Q
    ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||   | | || || ||||||||||||||||||||  ||||| ||||||    
T  19785574 caatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtcggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttct 19785475  T
Q  301 ct 302  Q
    ||    
T  19785474 ct 19785473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 19795813 - 19796114
Alignment:
Q  1 tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt 100  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||| || ||  |||||||||  |  ||    
T  19795813 tcaaccgatcacgaaccctataagcataatgtgcctcctccacaccttcatactcctccctagggaagatcttcttggcaatggtctcacacagaagagt 19795912  T
Q  101 cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa 200  Q
     | || |||||| ||||||||||| ||||| |||||||| ||||||||||| || ||  ||| ||||||  ||||||||||||| | ||| ||||| |||    
T  19795913 tgaccgatcaaaggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaa 19796012  T
Q  201 caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct 300  Q
    |||||||  ||||||||||| |||||||| ||||||||||||||||  || ||   | |||| || ||||||||||||||||| ||| ||||| ||||||    
T  19796013 caatcagcgaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttct 19796112  T
Q  301 ct 302  Q
    ||    
T  19796113 ct 19796114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 15835120 - 15835421
Alignment:
Q  1 tcaaacgatcacgaaccctataagcataatgagcctcctccacaccttcatactcctccctaggaaaaatcctctttgcgatactctcacacaacaatgt 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| || |||||||| || ||  |||||||||  |  ||    
T  15835120 tcaaacgatcacgaaccctataagcataatgcgcctcctccacaccttcatattcctcccgagggaatatcctcttggcaatggtctcacacagaagagt 15835219  T
Q  101 cgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaa 200  Q
     | || |||||| ||||||| ||  || || |||||||| ||||||||||| || ||| |||  |||||| ||||||||||||||| ||| ||||| |||    
T  15835220 tgaccgatcaaaggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaa 15835319  T
Q  201 caatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttct 300  Q
    ||||||| |||||||| ||| ||||||| |||||| |||||||||| |||||||||||| || || ||||||||||||||||||||  ||||| ||||||    
T  15835320 caatcagcaaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttct 15835419  T
Q  301 ct 302  Q
    ||    
T  15835420 ct 15835421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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