View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6349_low_9 (Length: 267)
Name: NF6349_low_9
Description: NF6349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6349_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 124 - 257
Target Start/End: Original strand, 4598789 - 4598922
Alignment:
| Q |
124 |
tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtga |
223 |
Q |
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| T |
4598789 |
tagaagtaaaagggtgctacctgattgcagaagaaacataatatagatgacgataatagtagtcaattctgttagtatccatgagcgcctcttcgagtga |
4598888 |
T |
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| Q |
224 |
cagcgttgaatcattgtcctcgttcatacctatg |
257 |
Q |
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| T |
4598889 |
cagcgttgaatcattgtcctcgttcatacctatg |
4598922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 4623302 - 4623425
Alignment:
| Q |
134 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
233 |
Q |
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| T |
4623302 |
agggtgctacctcattgcagataaaagataatatagatgacgataaaagtaatcaattctgttagtatccatgagtgcctcttccagtgatagcgttgga |
4623401 |
T |
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| Q |
234 |
tcattgtcctcgttcatacctatg |
257 |
Q |
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| T |
4623402 |
tcattgacttcattcatacctatg |
4623425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 25016030 - 25016140
Alignment:
| Q |
145 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
244 |
Q |
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| T |
25016030 |
tgattgcagatgaaacataataaagatggcgataaaagtaatcaattctgtaagtatccattagcgcttcttcaagtgatagtgttggatcattgagctc |
25016129 |
T |
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| Q |
245 |
gttcataccta |
255 |
Q |
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|| |||||||| |
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| T |
25016130 |
gtccataccta |
25016140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 25037313 - 25037423
Alignment:
| Q |
145 |
tgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaatcattgtcctc |
244 |
Q |
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| T |
25037313 |
tgattgcagatgaaatataataaagatgtcgataaaagtaatcgattctgtaagtatccatgagcgcctcttcaagtgatagcgttggatcatttaactc |
25037412 |
T |
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| Q |
245 |
gttcataccta |
255 |
Q |
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|| |||||||| |
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| T |
25037413 |
gtccataccta |
25037423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 4598649 - 4598685
Alignment:
| Q |
17 |
caaaatatccttgcacattcacaccactcctacacac |
53 |
Q |
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| T |
4598649 |
caaaatatccttgcacattcacaccacgcctacacac |
4598685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 25002311 - 25002270
Alignment:
| Q |
161 |
ataatatagatgacgataatagtaatcaattctgttagtatc |
202 |
Q |
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|||||| |||||||||||| ||||||||||||||| |||||| |
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| T |
25002311 |
ataataaagatgacgataaaagtaatcaattctgtcagtatc |
25002270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 18805701 - 18805598
Alignment:
| Q |
134 |
agggtgctacctgattgcagaagaaacataatatagatgacgataatagtaatcaattctgttagtatccatgagtgcctcttcgagtgacagcgttgaa |
233 |
Q |
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||||||||||||||||||||| | ||| ||||| ||||||||||||| |||||||||||| | | |||||||||| | |||||||||||| || |||| | |
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| T |
18805701 |
agggtgctacctgattgcagatgcaacgtaataaagatgacgataatggtaatcaattctataaatatccatgagcgtctcttcgagtgatagggttgga |
18805602 |
T |
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| Q |
234 |
tcat |
237 |
Q |
| |
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|||| |
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| T |
18805601 |
tcat |
18805598 |
T |
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