View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6350_low_2 (Length: 495)
Name: NF6350_low_2
Description: NF6350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6350_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 165 - 493
Target Start/End: Complemental strand, 9176134 - 9175806
Alignment:
| Q |
165 |
tcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacggcaaagaaagatattacaccggctg |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9176134 |
tcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacgacaaagaaagatattacaccggctg |
9176035 |
T |
|
| Q |
265 |
cttaacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatata |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9176034 |
cttaacaatatgcaacggtactcgaaacagaattgaaaacggagcatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatata |
9175935 |
T |
|
| Q |
365 |
actatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatt |
464 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9175934 |
actatacaagcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttcactgtttctgatt |
9175835 |
T |
|
| Q |
465 |
tggacaattttccttctgagaagcttcct |
493 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |
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| T |
9175834 |
tggacaattttccttatgagaggcttcct |
9175806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 9203316 - 9202833
Alignment:
| Q |
18 |
aaaacaacacagaattattgtggggtaatgtacaagtttccaacataaacatcctcgaaggacaacttgaagtgtcgactattgtctcccgctattgtga |
117 |
Q |
| |
|
||||| ||||| ||||||||||| | || |||||||||||||||||| | || ||||||||||||||||| ||| | |||||||| || |||||| |
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| T |
9203316 |
aaaacgacacaaaattattgtggagcgatatacaagtttccaacataagcgtcatcgaaggacaacttgaactgttgttctttgtctccagcaattgtgg |
9203217 |
T |
|
| Q |
118 |
taa------cggaagttaccttcaaccctctttaggcattaatgacggcaggttcagcatatcacccagagaaaataagttcttaacagttggttgtaac |
211 |
Q |
| |
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||| |||||||||| |||| ||| ||||| |||| ||| ||||| |||||| ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
9203216 |
taatggtaacggaagttacaatcaatcctttttagacatttttgatggcagattcagcttatcaaccagagaaaataagtttttaacagttggttgtaac |
9203117 |
T |
|
| Q |
212 |
agtctcggtgttctcagaagcatttacggcaaagaaagatattacaccggctgcttaacaatatgcaacggtactcgaaacagaattgaaaacggaatat |
311 |
Q |
| |
|
||| ||||| |||||||||||| ||||| ||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| || |
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|
| T |
9203116 |
agtatcggttttctcagaagcacttacgagaaagaaacattttacaccggttgcttaacaatatgcgacggtactcgaaacagaatcgaaaacggagcat |
9203017 |
T |
|
| Q |
312 |
gttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9203016 |
gttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatg |
9202917 |
T |
|
| Q |
412 |
tagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgagaagcttccttt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9202916 |
tagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttctgagaagcttccttt |
9202833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 157 - 478
Target Start/End: Original strand, 9114277 - 9114598
Alignment:
| Q |
157 |
cggcaggttcagcatatcacccagagaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacggcaaagaaagatattac |
256 |
Q |
| |
|
||||| |||||||||||||| || |||||| ||||||||||||||||||||| | ||| |||| |||||| |||||||||| ||| |||| ||||| | |
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|
| T |
9114277 |
cggcacgttcagcatatcacgcaaagaaaacaagttcttaacagttggttgtgatagttacggtattctcaacagcatttacgacaaggaaacatattcc |
9114376 |
T |
|
| Q |
257 |
accggctgcttaacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatga |
356 |
Q |
| |
|
| ||| |||||||||||||| ||||||| |||||| ||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
9114377 |
atcggttgcttaacaatatgtaacggtaatcgaaagagaattgaaaatggaacatgttctggtattggttgttgtgaagttgatattccacctaagatga |
9114476 |
T |
|
| Q |
357 |
ggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgt |
456 |
Q |
| |
|
|||||||||||||| || ||| | || | | ||| || ||||||||| ||||||| |||| |||||||||||||||||| ||||||||| ||||| |
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|
| T |
9114477 |
ggaatataactatagaagcttttgctttttttaattccaatgaatctttgagatgtagatattcttttgttgttaaaaatggagcttataatttttctgt |
9114576 |
T |
|
| Q |
457 |
ttctgatttggacaattttcct |
478 |
Q |
| |
|
|||| |||||||||| |||||| |
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|
| T |
9114577 |
ttctcatttggacaaatttcct |
9114598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 241 - 493
Target Start/End: Complemental strand, 9158101 - 9157849
Alignment:
| Q |
241 |
caaagaaagatattacaccggctgcttaacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgat |
340 |
Q |
| |
|
|||||||| ||||| ||||| ||| | |||| ||| || |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
9158101 |
caaagaaacatattcaaccggttgcctgacaagatgtaatggtaatcgaaacagaatagaaaacggaacatgttcgggtattggttgttgtcaagttgat |
9158002 |
T |
|
| Q |
341 |
attccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggat |
440 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||| ||| || ||| | || |||||||| ||||| |||| |||||||||||| |||| | |
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|
| T |
9158001 |
attccacctatgatgaggaatataagtatagaagcttctgattttcctaattccacggattctttggggtgtagttattcatttgttgttaaagatgggt |
9157902 |
T |
|
| Q |
441 |
tttataatttctctgtttctgatttggacaattttccttctgagaagcttcct |
493 |
Q |
| |
|
|||||||||| ||| ||||| ||||||| |||||||||| ||||| ||||||| |
|
|
| T |
9157901 |
tttataatttttctatttctcatttggataattttccttatgagaggcttcct |
9157849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 243 - 457
Target Start/End: Complemental strand, 9164214 - 9164000
Alignment:
| Q |
243 |
aagaaagatattacaccggctgcttaacaatatgcaacggtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatat |
342 |
Q |
| |
|
|||||| ||||| ||||| |||||||||| ||| ||||||| |||||| |||| ||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9164214 |
aagaaacatattcaaccggttgcttaacaagatgtaacggtaatcgaaatcgaatcgaaaatggaacatgttcgggtattggttgttgtcaagttgatat |
9164115 |
T |
|
| Q |
343 |
tccacctatgatgaggaatataactatacaatcttctaattatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattt |
442 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||| | ||| || ||| | || ||||| || ||||| |||| |||||||||||| |||||||| |
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|
| T |
9164114 |
tccacctatgatgaggaatataagtgtacaagcttttgattttcctaattccacggattctttagggtgtagttattcatttgttgttaaagatggattt |
9164015 |
T |
|
| Q |
443 |
tataatttctctgtt |
457 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
9164014 |
tataatttcactgtt |
9164000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 182 - 492
Target Start/End: Complemental strand, 9220610 - 9220300
Alignment:
| Q |
182 |
gaaaataagttcttaacagttggttgtaacagtctcggtgttctcagaagcatttacggcaaagaaagatattacaccggctgcttaacaatatgcaacg |
281 |
Q |
| |
|
||||| |||||| |||| ||||||||| ||||| |||| ||||| || |||||| | |||||| ||||| ||||| |||||||||| ||| | | |
|
|
| T |
9220610 |
gaaaacaagttcataacggttggttgtgacagttacggttatctcaacagtatttacaacgaagaaacatattcaaccggttgcttaacaagatgttatg |
9220511 |
T |
|
| Q |
282 |
gtactcgaaacagaattgaaaacggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaa |
381 |
Q |
| |
|
||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||| | |
|
|
| T |
9220510 |
gtaatcggaatcaaattgaaaacggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaagtttctga |
9220411 |
T |
|
| Q |
382 |
ttatctcgatttaaacgaatctttgggatgtagcaattcgtttgttgttaaaaatggattttataatttctctgtttctgatttggacaattttccttct |
481 |
Q |
| |
|
|| || ||| | || |||||||| ||||| |||| |||||||||||| |||||| |||||||| |||||||| ||||||| |||||||||| | |
|
|
| T |
9220410 |
ttttcctaattccacggattctttggggtgtagttattcatttgttgttaaagatggatcctataattttactgtttctcatttggataattttccttat |
9220311 |
T |
|
| Q |
482 |
gagaagcttcc |
492 |
Q |
| |
|
||| |||||| |
|
|
| T |
9220310 |
aagatgcttcc |
9220300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 9164432 - 9164357
Alignment:
| Q |
19 |
aaacaacacagaattattgtggggtaatgtacaagtttccaacataaacatcctcgaaggacaacttgaagtgtcg |
94 |
Q |
| |
|
|||| ||||| ||||||||| || ||| |||||||||||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
9164432 |
aaacgacacaaaattattgttaggcaatttacaagtttccaacataaacattcttgaaggacaacttgaattgtcg |
9164357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 9147121 - 9147081
Alignment:
| Q |
48 |
tacaagtttccaacataaacatcctcgaaggacaacttgaa |
88 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
9147121 |
tacaagtttctaacataaacatccttgaaggacaacttgaa |
9147081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 383
Target Start/End: Original strand, 1840314 - 1840392
Alignment:
| Q |
305 |
ggaatatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt |
383 |
Q |
| |
|
|||| |||||||||||| || ||||| |||||||||||||| |||| ||||| |||||| ||||||| || |||||| |
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|
| T |
1840314 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
1840392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 9220762 - 9220693
Alignment:
| Q |
24 |
acacagaattattgtggggtaatgtacaagtttccaacataaacatcctcgaaggacaacttgaagtgtc |
93 |
Q |
| |
|
||||| ||||| | ||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
9220762 |
acacaaaattactttggggcaatgtacaagtgcataacataaacatcctccaaggagaacttgaagtgtc |
9220693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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