View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6350_low_3 (Length: 316)
Name: NF6350_low_3
Description: NF6350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6350_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 94 - 316
Target Start/End: Original strand, 31719388 - 31719618
Alignment:
| Q |
94 |
gttccaatgtcacattttgactaaaaataacctaagctaaacatcattaaattaacttatgaagctacaaagaaggagtgtaagtaacctcctggtgagc |
193 |
Q |
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| T |
31719388 |
gttccaatgtcacattttgactaaaaataacctaagctaaacatcattaaattaacttatgaagctacaaagaaggagtgtaagtaacctcctggtgagc |
31719487 |
T |
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| Q |
194 |
agatctacggattctgtctgtctgccgggcaagacggatcttcttcagcacatacctaaacacattaaatt------------aaaactatatgttaatt |
281 |
Q |
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| T |
31719488 |
agatctacggattctgtctgactgccgggcaagacggatcttcttcagcacatacctaaacacattaaattaaaaaaaaaaaaaaaactatatgttaatt |
31719587 |
T |
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| Q |
282 |
agctacctagcttatactaatcataatgaaaaaca |
316 |
Q |
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| T |
31719588 |
agctac----cttatactaatcataatgaaaaaca |
31719618 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 38241681 - 38241609
Alignment:
| Q |
180 |
acctcctggtgagcagatctacggattctgtctgtctgccgggcaagacggatcttcttcagcacatacctaa |
252 |
Q |
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| T |
38241681 |
acctcctgatgggccgacctacgggttctgtcagtttggcgagcaagacggatcttcttgaggacatacctaa |
38241609 |
T |
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