View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6351_high_12 (Length: 225)
Name: NF6351_high_12
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6351_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7728017 - 7728226
Alignment:
| Q |
1 |
tctgtgtc-tgtccggtgtccatgtctgtgttacgtagatattggatacaacattgacatcgataataatttaataaatgaaaaatagtttgtaactacg |
99 |
Q |
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| T |
7728017 |
tctgtgtcgtgtccggtgtccatgtctgtgttacgtagatattgga--caacattgacatcgataataatttaataaatgaaaaatagtttgtaactacg |
7728114 |
T |
|
| Q |
100 |
tgtgtcgggtgtctgattgaacaccgtgcacacctttaatctgaagtgttgatgctacatagcggttcttacttagcttctattgaagtaatagttttaa |
199 |
Q |
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| T |
7728115 |
tgtgtcgggtgtctgattgaacaccgtgcacacctttaatctgaagtgttgatgctacatagcggttcttacttagcttctattgaagtaatagttttaa |
7728214 |
T |
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| Q |
200 |
gtgagattcatg |
211 |
Q |
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| T |
7728215 |
gtgagattcatg |
7728226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 33535657 - 33535617
Alignment:
| Q |
118 |
gaacaccgtgcacacctttaatctgaagtgttgatgctaca |
158 |
Q |
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| T |
33535657 |
gaacaccggacacacctttaatctgaagtgtcgatgctaca |
33535617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 9550396 - 9550368
Alignment:
| Q |
132 |
cctttaatctgaagtgttgatgctacata |
160 |
Q |
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| T |
9550396 |
cctttaatctgaagtgttgatgctacata |
9550368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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