View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6351_high_2 (Length: 484)
Name: NF6351_high_2
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6351_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 109 - 464
Target Start/End: Complemental strand, 35281595 - 35281240
Alignment:
| Q |
109 |
attgttccaccatcgaaagtgagggggagcaagttaggcaagggagtagttttgaagatctgtgttatttcctgtgattctatagtcaaggtttgactga |
208 |
Q |
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| T |
35281595 |
attgttccaccatcgaaagtgagggggagcaagttaggcaagggagtagttttgaagatctgtgttatttcctgtgattctatagtcaaggtttgactga |
35281496 |
T |
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| Q |
209 |
aatgctctatgaatttggtgatcatatagtaactactgctgagcaaagaccttctactagtttcattatctcatttttctaatgtttgggaggctagctt |
308 |
Q |
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| T |
35281495 |
aatgctctatgaatttggtgatcatatagtaactactgctgagcaaagaccttctactagtttcattatctcatttttctaatgtttgggaggctacctt |
35281396 |
T |
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| Q |
309 |
tccataagactcttcttcattacaagggtgagtaaatgaataatgatgcctgttgcacattgtctatatgcatatcatatttacggtttatttctatttt |
408 |
Q |
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| T |
35281395 |
tccataagactcttcttcattacaagggtgagtaaatgaataatgatgcttgttgcacattgtctatatgcatatcatatttacggtttatttatatttt |
35281296 |
T |
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| Q |
409 |
ttnnnnnnntcgattaaagatgatggccatggccccgttcttttatgactatttgg |
464 |
Q |
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| T |
35281295 |
taaaaaaaatcgattaaagatgatggccatggccccgttcttttatgactatttgg |
35281240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 35281731 - 35281637
Alignment:
| Q |
18 |
agaataagccgaaaagcatttgaacccaaattacttgtgcatgagtagttttttcacctttcaagatgtgtgatttctgatgataatgttgattg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35281731 |
agaataagccgaaaagcatttgaacccaaattacttgtgcatgagtagttttttcacctttcaagatgtgtgatttctgatgataatgttgattg |
35281637 |
T |
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