View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6351_high_3 (Length: 398)

Name: NF6351_high_3
Description: NF6351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6351_high_3
NF6351_high_3
[»] chr7 (8 HSPs)
chr7 (20-387)||(1300271-1300637)
chr7 (86-387)||(8658244-8658542)
chr7 (278-375)||(8666489-8666586)
chr7 (313-387)||(3146372-3146446)
chr7 (21-61)||(8658149-8658189)
chr7 (278-375)||(8672070-8672167)
chr7 (278-344)||(8645950-8646016)
chr7 (280-337)||(8653261-8653318)
[»] chr1 (2 HSPs)
chr1 (137-387)||(4679540-4679787)
chr1 (245-375)||(29464888-29465019)
[»] chr2 (1 HSPs)
chr2 (245-387)||(16658509-16658648)
[»] chr4 (1 HSPs)
chr4 (245-375)||(9336892-9337022)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 1300271 - 1300637
Alignment:
Q  20 taaatatgctactcaaattagaataagaaaagaaaaaacccaaaacctaaacttgaatactatatatatgtttaagaacttccaaaatcaagatatcaat 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||    
T  1300271 taaatatgctactcaaattagaataagaaaagaaaaaaccaaaaacctaaacttcaatactctatatatgtttaagaacttccaaaatcaagatatccat 1300370  T
Q  120 tgaaaagagatcctgaaaaagaagatttgggtttattctctatggcagtattgactacaagcttttccaacaagatctccagctccttgagatgatcctc 219  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1300371 tgaaaagagatcctaaaaaa-aagatttgggtttattctcaatgccagtattgactacaagcttttccaacaaaatctccagctccttgagatgatcctc 1300469  T
Q  220 aacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagaga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1300470 aacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagaga 1300569  T
Q  320 tttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1300570 tttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaatcattcat 1300637  T

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Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 86 - 387
Target Start/End: Original strand, 8658244 - 8658542
Alignment:
Q  86 tatgtttaagaacttccaaaatcaagatatcaattgaaaagagatcctgaaaaagaagatttgggtttattctctatggcagtattgactacaagctttt 185  Q
    ||||||||||||||| |||||| |||| |||||||||||||| ||||| |||||||||||||| | |||||||| ||| |||||||||||||||||||||    
T  8658244 tatgtttaagaactttcaaaatgaagacatcaattgaaaagatatcctaaaaaagaagatttgtgcttattctcaatgccagtattgactacaagctttt 8658343  T
Q  186 ccaacaagatctccagctccttgagatgatcctcaacaacatctattttctgctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgc 285  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||   |||||||||| || ||||||| ||||||  | |||| ||||    
T  8658344 ccaacatgatttccagctccttcagatgatcctcaacaacatctattttctgctgt---ttgttattctcatgaagcaagtttgttgccaaggtagttgc 8658440  T
Q  286 attgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattc 385  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||    
T  8658441 attgttgatcttttccctttctccacgggagaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaatcattc 8658540  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 375
Target Start/End: Original strand, 8666489 - 8666586
Alignment:
Q  278 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc 375  Q
    ||||||||||||||||||||| |  |||||| | |||||||| | | ||||||||||||||||||||| || |||||||  |||||||||||| ||||    
T  8666489 gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaatc 8666586  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 3146372 - 3146446
Alignment:
Q  313 ggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat 387  Q
    ||||||||||| ||| ||||||||||||||||| ||||| ||||  ||||||||||||||||| || ||||||||    
T  3146372 ggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcat 3146446  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 8658149 - 8658189
Alignment:
Q  21 aaatatgctactcaaattagaataagaaaagaaaaaaccca 61  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  8658149 aaatatgctactcaaattagaatacgaaaagaaaaaaccca 8658189  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 8672167 - 8672070
Alignment:
Q  278 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatc 375  Q
    ||||||||||||||||||||| |  |||||| | |||||||| | | ||||||||  ||||||| ||| || |||||||  |||||||||||| ||||    
T  8672167 gtaattgcattgttgatctttgcaatttcttgaggggagagaatcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaatc 8672070  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 8645950 - 8646016
Alignment:
Q  278 gtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 344  Q
    ||||||||||| |||||||| ||  ||||||||   ||||||||||| |||||||||||| ||||||    
T  8645950 gtaattgcattattgatcttgtcattttctttagatgagagatttaatttaacatccttcctcttta 8646016  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 8653261 - 8653318
Alignment:
Q  280 aattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttc 337  Q
    ||||||||||||||||||||| ||||||| | ||||||   ||| |||||||||||||    
T  8653261 aattgcattgttgatcttttcactttcttgaggggagatgattagattaacatccttc 8653318  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 137 - 387
Target Start/End: Complemental strand, 4679787 - 4679540
Alignment:
Q  137 aaagaagatttgggtttattctctatggcagtattgactacaagcttttccaacaagatctccagctccttgagatgatcctcaacaacatctattttct 236  Q
    |||||||||||| | || |||||  ||  ||| |||||| ||||||||||||||| | |||||| |||||| ||||||||||||| |||||||||||  |    
T  4679787 aaagaagatttgtgctttttctcattgctagtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttctt 4679688  T
Q  237 gctgtttgttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatcctt 336  Q
     ||||   | ||||||||||||||||||| | || |  || |||||||||| |||||||||||| ||||| | ||  ||||| |||||||||||||||||    
T  4679687 tctgt---tcgttattcttatcaagcaagttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatcctt 4679591  T
Q  337 cttctttaaggcattcttcactttgtaaacacaataatccaaagcattcat 387  Q
    ||||||||| |||||||| |  |||||||||||| | ||||| ||| ||||    
T  4679590 cttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcat 4679540  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 29464888 - 29465019
Alignment:
Q  245 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacggga-gagatttaaattaacatccttcttcttt 343  Q
    ||||||||||||||||||||  |    | ||| |||||||||||||||||||| || ||||||| | |||| |||  | ||||||||| |||||||||||    
T  29464888 ttgttattcttatcaagcaaattcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttcttt 29464987  T
Q  344 aaggcattcttcactttgtaaacacaataatc 375  Q
    || | ||||||||  |||||||||||| ||||    
T  29464988 aatgtattcttcatattgtaaacacaagaatc 29465019  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 387
Target Start/End: Complemental strand, 16658648 - 16658509
Alignment:
Q  245 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 344  Q
    |||||||||||||||||||| ||||| |  || |||||||||||||||||||| ||  |||||| |  |||||| |||||||| |||||    |||||||    
T  16658648 ttgttattcttatcaagcaaacttgtggccacagtaattgcattgttgatcttctcaatttcttgagaggagagctttaaattcacatc---tttcttta 16658552  T
Q  345 aggcattcttcactttgtaaacacaataatccaaagcattcat 387  Q
    | ||||||||||  |||||||||||||||||||| ||||||||    
T  16658551 aagcattcttcatattgtaaacacaataatccaatgcattcat 16658509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 375
Target Start/End: Complemental strand, 9337022 - 9336892
Alignment:
Q  245 ttgttattcttatcaagcaagcttgttgtgacggtaattgcattgttgatcttttccctttctttacgggagagatttaaattaacatccttcttcttta 344  Q
    ||||||||||||||||||||  |  | |  || |||||||||||||||||||| ||  |||||| | | | |||| | | ||||||||  ||||||||||    
T  9337022 ttgttattcttatcaagcaaattcatagcaacagtaattgcattgttgatcttctcaatttcttgaggcgtgagaatcagattaacattgttcttcttta 9336923  T
Q  345 aggcattcttcactttgtaaacacaataatc 375  Q
    | || |||||||  |||||||||||| ||||    
T  9336922 aagcgttcttcatattgtaaacacaagaatc 9336892  T

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